Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00841
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1117 - 8846649-8847658,8847925-8848024,8848810-8848845           29   5.5  
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486...    28   9.7  
07_03_1532 - 27519701-27520831                                         28   9.7  
07_01_1218 - 11633829-11634628,11634713-11635050,11635349-116354...    28   9.7  
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    28   9.7  

>01_01_1117 - 8846649-8847658,8847925-8848024,8848810-8848845
          Length = 381

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 718 YWIKLISVPEMLPQKYITSWTSFNKK 641
           +W+K+ ++PE+LPQ+ I   T  +KK
Sbjct: 296 WWLKVGAIPEILPQEIIKVITQESKK 321


>12_02_0483 +
           19546295-19546397,19547163-19547482,19547606-19548611,
           19549890-19549985,19550500-19551551
          Length = 858

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 718 YWIKLISVPEMLPQKYITSWTSFNKK 641
           +W+K  ++PE+LPQ+ I   T  +KK
Sbjct: 676 WWLKAGAIPEILPQEIIKVITQESKK 701


>07_03_1532 - 27519701-27520831
          Length = 376

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 718 YWIKLISVPEMLPQKYITSWTSFNKK 641
           +W+K  ++PE+LPQ+ I   T  +KK
Sbjct: 194 WWLKAGAIPEILPQEIIKVITQESKK 219


>07_01_1218 -
           11633829-11634628,11634713-11635050,11635349-11635445,
           11635482-11635725,11636114-11636122
          Length = 495

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 718 YWIKLISVPEMLPQKYITSWTSFNKK 641
           +W+K  ++PE+LPQ+ I   T  +KK
Sbjct: 286 WWLKAGAIPEILPQEIIKVITQESKK 311


>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +1

Query: 70  VPMNSTLTIPS*NCLKFDKIFMVL---HTIQAQFELPIFLGTFIDHCYCTKYVIVHIYLK 240
           VP +S+ T  S N      ++ ++   H+    F +   L  ++D C+      VH YLK
Sbjct: 5   VPCSSSSTHRSRNFCDLVLVYAIIGSMHSSMTLFSVCKILSLYVDMCFVDYSKEVHSYLK 64

Query: 241 Y 243
           Y
Sbjct: 65  Y 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,895,267
Number of Sequences: 37544
Number of extensions: 366285
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)