Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00841
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    29   3.8  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    29   3.8  
U23177-5|AAM22056.1|  192|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
 Frame = -2

Query: 140 STIKILSNLRQF------YDGIVNVEFIGTFCQCQTQ-SKPAFRIE 24
           S I ++ +L QF      YD I N++F+   CQ Q+  SKP  R +
Sbjct: 123 SPIPLMDHLSQFILEVPNYDAIFNLKFLDKLCQMQSNISKPLSRFD 168


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
 Frame = -2

Query: 140 STIKILSNLRQF------YDGIVNVEFIGTFCQCQTQ-SKPAFRIE 24
           S I ++ +L QF      YD I N++F+   CQ Q+  SKP  R +
Sbjct: 123 SPIPLMDHLSQFILEVPNYDAIFNLKFLDKLCQMQSNISKPLSRFD 168


>U23177-5|AAM22056.1|  192|Caenorhabditis elegans Hypothetical
           protein C56G2.9 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 764 IEKDKMLEL*KPGLGVLD*INLGAGDVATKIHHIVDIIQ*ETT 636
           I   +   L  PGLG    + LG  + AT + +IVDI    TT
Sbjct: 101 ISSQRSNSLESPGLGSPQNVGLGIFEAATMMRNIVDITTDSTT 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,803
Number of Sequences: 27780
Number of extensions: 336631
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)