Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00841
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 575 PPDGEWLPSPMNFSNA 528
           PPD  W P  + F+NA
Sbjct: 104 PPDKVWKPDIVLFNNA 119


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 116 NSTKSLWYFIPSRHNSNY 169
           + T++L+Y   S HN NY
Sbjct: 257 HKTQNLYYSAMSSHNLNY 274


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 657 VHDVMYFCGNISGTEINLIQYA 722
           + D+++FC  +   ++N  +YA
Sbjct: 456 IEDLLHFCRQMYAMKVNNAEYA 477


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -1

Query: 684 CHKNTSHRGHH 652
           CH    H GHH
Sbjct: 274 CHTGLGHYGHH 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,728
Number of Sequences: 438
Number of extensions: 4610
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)