Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00840
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   1.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.2  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 408 GSLMELHSPFLLVGNNASFLVM 473
           GS++ + +P+L VG N  F +M
Sbjct: 287 GSIIGVRAPYLRVGGNKQFEMM 308


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 408 GSLMELHSPFLLVGNNASFLVM 473
           GS++ + +P+L VG N  F +M
Sbjct: 294 GSIIGVRAPYLRVGGNKQFEMM 315


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 411 SLMELHSPFLLVGNNASFLVM 473
           S++ + +P+L VG N  F +M
Sbjct: 296 SVVGVRAPYLRVGGNNQFTMM 316


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 642 TLSIILCNPFSCIGIIAKVEI 704
           T S++ C    C+G+I  V +
Sbjct: 69  TTSMVFCIIIMCLGVIGNVMV 89


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 642 TLSIILCNPFSCIGIIAKVEI 704
           T S++ C    C+G+I  V +
Sbjct: 69  TTSMVFCIIIMCLGVIGNVMV 89


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/38 (28%), Positives = 14/38 (36%)
 Frame = -3

Query: 538 PA*QYHLETRTLMICCMHFNLTITKNDALFPTSRNGEC 425
           PA  +H    T   C   F  T     ++     NGEC
Sbjct: 11  PAAGFHFGAFTCEGCKSFFGRTYNNISSISECKNNGEC 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,718
Number of Sequences: 336
Number of extensions: 4143
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)