Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00840
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    29   0.73 
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    28   1.7  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    27   3.9  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.9  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.8  

>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 709 FLISTLAIIPIQLNGLQSIILSVEFNSVQSP*SNFRVYP-LF*YVLMHSE 563
           F+I T   I +++ G Q  I++VEF++VQ   S FR Y  +  Y + HS+
Sbjct: 57  FIIPTSVDILVKVAGFQRYIVNVEFSNVQ---SYFRYYNYISLYFVTHSK 103


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 529 VKLVYHDGTSETRYASGRIRIKDKHGSLIMDSARN*IPHL 648
           +  +Y+DGTS T +   R R+KD  G  + D  +  IP L
Sbjct: 141 IPFIYYDGTSTTYHV--RTRLKDSVGHFLADMKQQ-IPFL 177


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 722 FTKFFFNLHFSNYPYTTKRVAEYNTKCGI 636
           + K   N++F +     KR+ EYNT C +
Sbjct: 95  YEKSLSNINFFSLSNDLKRLEEYNTSCSV 123


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 746 NHIVNSKTFTKFFFNLHFSNYPYTTKRVA-EYNTKC---GIQFRAESIIK 609
           N I   +TF +FFF    +N  Y  + +A +  +KC    IQ   E +IK
Sbjct: 124 NQINQQETFIRFFFKYSKTNLSYGVRSIALDGLSKCIETSIQSTNEDLIK 173


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 332 SSEIRLPNGSIRYFDPKNEHVREEWRFPDGAALTISASGEQRIIFSNGQIEVHA 493
           SSEI   +G + Y DP +         P  A  +I ++   R +F N  I  +A
Sbjct: 793 SSEISFTSGELEYSDPNDPTKATHSVLPWSAMWSIISTQSVRTMFYNEPIHQNA 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,886
Number of Sequences: 5004
Number of extensions: 66099
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)