Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00840
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               55   7e-08
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         31   1.4  
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   30   1.8  
SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)                       29   3.1  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         29   4.1  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)            28   7.2  
SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27)                28   7.2  
SB_55837| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_48456| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_2716| Best HMM Match : PD40 (HMM E-Value=0.00088)                   28   9.5  

>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 27/67 (40%), Positives = 37/67 (55%)
 Frame = +2

Query: 305  QVEKRYKDGSSEIRLPNGSIRYFDPKNEHVREEWRFPDGAALTISASGEQRIIFSNGQIE 484
            Q+EK Y DG+ EI  P+ +++Y         EE  FPDG    +S  GE+ I F NGQ E
Sbjct: 1188 QIEKHYTDGTKEIIFPDQTVKYLHTNGS---EECVFPDGTVQRLSHDGERTIEFPNGQRE 1244

Query: 485  VHAADHK 505
            +H   +K
Sbjct: 1245 IHTKFYK 1251



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 514  FPDGTVKLVYHDGTSETRYASGRIRIKDK 600
            FPDGTV+ + HDG     + +G+  I  K
Sbjct: 1220 FPDGTVQRLSHDGERTIEFPNGQREIHTK 1248


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 58  SDFFGINENLRTKSPISTMLSNHSSLRSET 147
           +D  G   N RTKSPIS+++ N +S +S+T
Sbjct: 773 NDSEGEGSNERTKSPISSIIDNTNSQKSDT 802


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = -1

Query: 669 TGCRV*Y*VWNSIPCRV--HNQTSVF---ILYSDTS*CIASLRSTIVIYQLNSTIWKLAR 505
           TG R+    W    C    H+Q+S+F   ++ + T    + + ST+++   + + W+L +
Sbjct: 372 TGARICIPEWTGNNCTSSKHSQSSIFPELLISTTTYSSYSKIPSTVILPSASPSRWRLTQ 431

Query: 504 L*SAACTS 481
           L S +C S
Sbjct: 432 LSSQSCES 439


>SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)
          Length = 321

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 1   PVSILSNRSQTSGYSPESCSDFFGINENLRTKSPISTMLSNHSSLRSET 147
           P    +NRS T  + P      F +N   R  SPI T++S+HS +RS T
Sbjct: 52  PCMYYNNRSATF-HLPLEGDLVFKLNPG-RENSPIPTVVSSHSKVRSST 98


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = -1

Query: 669  TGCRV*Y*VWNSIPCRV--HNQTSVF--ILYSDTS*CIAS-LRSTIVIYQLNSTIWKLAR 505
            TG R+    W    C    H+Q+S+F  +L S T+    S + ST+++   + + W+L +
Sbjct: 2381 TGTRICIPGWTGNNCTSSKHSQSSIFPELLSSTTTYSSYSKIPSTVILPSASPSRWRLTQ 2440

Query: 504  L*SAACTS 481
            L S +C S
Sbjct: 2441 LSSQSCES 2448


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = +2

Query: 317  RYKDGSSEIRLPNGSIRYFDPKNEHV-----REEWRF-PDGAALTISASGEQRIIFSNGQ 478
            R KDG   + LP+G    + P  E +      E+  + P G  +    SGE+ +   +G+
Sbjct: 944  RLKDGEKIVYLPSGERNVYLPSGEKIVYTPSGEKIVYSPSGETIVYPPSGEKIVYSPSGK 1003

Query: 479  IEVHAADHKR 508
            I V++A  ++
Sbjct: 1004 IIVYSASGEK 1013


>SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)
          Length = 1371

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 120 AEHSGYW*FCSKIFVDSKKI*TAFRRV 40
           +EHS +W FC ++ VD ++I  +  R+
Sbjct: 244 SEHSRHWFFCGRLVVDGQEIDKSLMRM 270


>SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27)
          Length = 665

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 120 AEHSGYW*FCSKIFVDSKKI*TAFRRV 40
           +EHS +W FC ++ VD ++I  +  R+
Sbjct: 244 SEHSRHWFFCGRLVVDGQEIDKSLMRM 270


>SB_55837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 511 EFPDGTVKLVYHDGTSETRYASGRIR--IKDKHGSLIMDSARN*IPHLVLYSATRL 672
           +FPD  VKLV  + + E R + GR    I   +   + D +R   P++ L+  + L
Sbjct: 110 DFPDDNVKLVIQETSPEQRQSVGRPESYISTPYVIFVPDGSRLKSPNIFLFMLSSL 165


>SB_48456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 350 PNGSIRYFDPKNEHVREEWRFPDGAALTISASGEQRIIFSNGQIEVHAADHKRASFQ 520
           P+ S  +    NE V+     P+   +TISA+GE+  I         AAD     FQ
Sbjct: 77  PDKSSLHDQKSNEQVQVSPE-PETVTVTISAAGEEHTIVGQQPTAAFAADPNTIQFQ 132


>SB_2716| Best HMM Match : PD40 (HMM E-Value=0.00088)
          Length = 248

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 350 PNGSIRYFDPKNEHVREEWRFPDGAALTISASGEQRIIFSNGQIEVHAADHKR 508
           P+G   ++ P  E +   +  P G  +  S SGE+ I   +G+I V++   K+
Sbjct: 125 PSGEKIFYSPSGEKI---FYSPSGEKIVYSPSGEKIIYSPSGEIIVYSPSGKK 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,593,452
Number of Sequences: 59808
Number of extensions: 461385
Number of successful extensions: 1105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)