Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00840
(768 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23174-4|AAC46710.2| 294|Caenorhabditis elegans Serpentine rece... 30 2.1
U23174-3|AAX22284.1| 381|Caenorhabditis elegans Serpentine rece... 30 2.1
Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical pr... 29 3.6
AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans Na/Ca,K-excha... 29 3.6
Z83123-7|CAB05612.2| 332|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 28 8.4
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr... 28 8.4
U88171-1|AAB42251.2| 630|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF038620-1|AAB93487.1| 256|Caenorhabditis elegans Hypothetical ... 28 8.4
>U23174-4|AAC46710.2| 294|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 14, isoform b
protein.
Length = 294
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -3
Query: 592 LF*YVLMHSESQKYHRDIPA*QYHLETRTLMICCM-------HFNLTITKNDALFPTSRN 434
LF YVL++S S+ HR++ L L+ C H LT+T ++A
Sbjct: 61 LFIYVLLNSSSRNLHRNLRISLASLAFAALIACLQLDFIAFYHLALTLTADNACDSMYEA 120
Query: 433 GECSSIREPPLLT 395
+C+ +R P +L+
Sbjct: 121 RKCAILRFPVVLS 133
>U23174-3|AAX22284.1| 381|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 14, isoform a
protein.
Length = 381
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -3
Query: 592 LF*YVLMHSESQKYHRDIPA*QYHLETRTLMICCM-------HFNLTITKNDALFPTSRN 434
LF YVL++S S+ HR++ L L+ C H LT+T ++A
Sbjct: 61 LFIYVLLNSSSRNLHRNLRISLASLAFAALIACLQLDFIAFYHLALTLTADNACDSMYEA 120
Query: 433 GECSSIREPPLLT 395
+C+ +R P +L+
Sbjct: 121 RKCAILRFPVVLS 133
>Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical
protein F35C12.2a protein.
Length = 596
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 371 NIGYCHSVSVFQRNHLYIFFLLDHISRYVFNIPIWKP*FRDPSDLLISIGFRFVFVKLDE 192
N+G V N L + S+ + ++ W P FRD S ++++ VF +DE
Sbjct: 169 NVGIGTIVGSATFNILCVLAFCTLFSKSILDLTWW-PLFRDVSIYMLALAM-LVFFFMDE 226
Query: 191 LVCF-VASALFSLKI 150
++ F A A+FS+ I
Sbjct: 227 MITFPEALAMFSIYI 241
>AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans
Na/Ca,K-exchanger protein.
Length = 596
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 371 NIGYCHSVSVFQRNHLYIFFLLDHISRYVFNIPIWKP*FRDPSDLLISIGFRFVFVKLDE 192
N+G V N L + S+ + ++ W P FRD S ++++ VF +DE
Sbjct: 169 NVGIGTIVGSATFNILCVLAFCTLFSKSILDLTWW-PLFRDVSIYMLALAM-LVFFFMDE 226
Query: 191 LVCF-VASALFSLKI 150
++ F A A+FS+ I
Sbjct: 227 MITFPEALAMFSIYI 241
>Z83123-7|CAB05612.2| 332|Caenorhabditis elegans Hypothetical
protein T04A11.9 protein.
Length = 332
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 497 DHKRASFQMV-LLSWYITMVLLRLAMHQDVSE*RINTE 607
D K A F+M+ + W IT +L +HQ + ++N++
Sbjct: 204 DFKNAPFEMINTVFWLITYLLCNFKLHQKLHYLKVNSQ 241
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 332 SSEIRLPNGSIRYFDPKNEHVREEWRFPDGAALTISASGEQRII 463
++EI LP GS+R +P E + PDG + + + R++
Sbjct: 422 ATEITLPTGSVRDNNPLKETSDKCSTLPDGLKIAVRKNARIRVL 465
>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical
protein C03D6.4 protein.
Length = 1390
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 227 IGFRFVFVKLDELVCFVASALFSLKITVSDLNDE 126
+G FV V ++L CF +L KIT ++N E
Sbjct: 51 LGVTFVTVNSNQLSCFHTKSLLGYKITRENMNVE 84
>U88171-1|AAB42251.2| 630|Caenorhabditis elegans Hypothetical
protein F25F8.1 protein.
Length = 630
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 721 LQNFFLISTLAIIPIQLNGLQSIILSV 641
L + F+ ++ I+PIQ+N +S I+SV
Sbjct: 202 LMSLFICESIGIVPIQVNDARSDIMSV 228
>AF038620-1|AAB93487.1| 256|Caenorhabditis elegans Hypothetical
protein H10D12.2 protein.
Length = 256
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = -3
Query: 748 IIT*SIAKHLQNFFLISTLAIIPIQLNGLQSIILSVEFNSVQSP*SNFRVYPLF*YVLMH 569
+I ++ HL LIS+ + + + L SI +F V+ NFR+ + Y+L+H
Sbjct: 188 VIVKDLSDHLVPSILISSSDLSEVSVQYLWSIFFWSDFVFVKPKIRNFRLKNVGIYILIH 247
Query: 568 SESQ 557
+++
Sbjct: 248 YQNR 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,368,179
Number of Sequences: 27780
Number of extensions: 371929
Number of successful extensions: 923
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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