Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00840
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.036
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             29   0.036
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.44 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 29.5 bits (63), Expect = 0.036
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 4   VSILSNRSQTSGYSPESCSDFFGINENLRTKSPISTML-SNHSSLRSETVIFNEKSAD 174
           +S  SNRS++SGY     S F   NE L    PIS      H   +S+T++     AD
Sbjct: 34  ISRNSNRSESSGYCGRRPSTFGSSNEAL--PQPISKRKDKEHKKKKSKTILAVNAEAD 89


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 0.036
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 4   VSILSNRSQTSGYSPESCSDFFGINENLRTKSPISTML-SNHSSLRSETVIFNEKSAD 174
           +S  SNRS++SGY     S F   NE L    PIS      H   +S+T++     AD
Sbjct: 34  ISRNSNRSESSGYCGRRPSTFGSSNEAL--PQPISKRKDKEHKKKKSKTILAVNAEAD 89


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 372 STLRMNMFVRSGGSLMELHSPFLLVGNNASFLVMVKLKCMQQIISVRVSRW 524
           S  R   FVR  G    L   F L  +   FL+ V + C+  ++   VS W
Sbjct: 217 SPYRNLTFVRREGEFSVLQVSFNLQRHTGYFLIQVYVPCVLIVVLSWVSFW 267


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 40  YSPESCSDFFGINENLRTKSPIST 111
           Y  E CS  F + ENL     I T
Sbjct: 120 YQCEYCSKSFSVKENLSVHRRIHT 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,555
Number of Sequences: 438
Number of extensions: 4357
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)