Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00840
(768 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ... 31 0.85
At1g27580.1 68414.m03361 F-box family protein similar to F-box p... 30 2.0
At1g27540.1 68414.m03357 F-box family protein similar to F-box p... 30 2.0
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 29 3.4
At5g62000.3 68418.m07784 transcriptional factor B3 family protei... 29 4.5
At5g62000.2 68418.m07783 transcriptional factor B3 family protei... 29 4.5
At5g62000.1 68418.m07782 transcriptional factor B3 family protei... 29 4.5
>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
similar to UV-damaged DNA binding protein (GI:12082087)
[Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
region
Length = 1088
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 341 IRLPNGSIRYFDPKNEHVREEWRFPDGAALTISASGEQRIIFSNG---QIEVHAADHKRA 511
+++ + S+R +R+EW P G + ++ + +++ + G + + D K
Sbjct: 462 VQVTSNSVRLVSSTTRELRDEWHAPAGFTVNVATANASQVLLATGGGHLVYLEIGDGKLT 521
Query: 512 SFQMVLLSWYIT 547
Q LL + ++
Sbjct: 522 EVQHALLEYEVS 533
>At1g27580.1 68414.m03361 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; confirmed by FLcDNA GI:16604421; contains
uncharacterized Arabidoppsis domain shared by 33
Arabidopsis proteins;simlar to unknown protein
GB:AAC63676
Length = 364
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 287 HIC*CGQVEKRYKDGSSEIRLPNGSIRYFDPKNEHVREEWRFPDGAALTISASGEQRIIF 466
H+ GQ E +KD S + RLP + E ++++ P + ++ +G+ ++F
Sbjct: 193 HLDLSGQDEDGFKDVSEKHRLPMWMPSMTMKERERMKQKRSIPSNKGIAVTRAGQVLVVF 252
Query: 467 SN--GQIEVHAADH 502
+ G E H H
Sbjct: 253 TYDLGTSESHRMFH 266
>At1g27540.1 68414.m03357 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; confirmed by FLcDNA GI:16604421; contains
uncharacterized Arabidoppsis domain shared by 33
Arabidopsis proteins
Length = 413
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 287 HIC*CGQVEKRYKDGSSEIRLPNGSIRYFDPKNEHVREEWRFPDGAALTISASGEQRIIF 466
H+ GQ E +KD S + RLP + E ++++ P + ++ +G+ ++F
Sbjct: 242 HLDLSGQDEDGFKDVSEKHRLPMWMPSMTMKERERMKQKRSIPSNKGIAVTRAGQVLVVF 301
Query: 467 SN--GQIEVHAADH 502
+ G E H H
Sbjct: 302 TYDLGTSESHRMFH 315
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 416 QGTSTPHEHVHS*GRNIGY-CHSVSVFQRNHLYIFFLLDHISRYVFNIPIW 267
Q +++PH H H +NIG+ S ++ ++L+ + + NIP W
Sbjct: 235 QASNSPHHHHHQTQQNIGFSSSSQNIISNSNLHGPMKQEESQHHYQNIPPW 285
>At5g62000.3 68418.m07784 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 365 RYFDPKNEHVREEWRFPDGAALTISASGEQRIIFSNGQIE-VHAADHKRASFQMVL 529
R DP+ RE W G +T+ ++ F G IE V A+ ++ A QM L
Sbjct: 50 RALDPEAALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPL 105
>At5g62000.2 68418.m07783 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 365 RYFDPKNEHVREEWRFPDGAALTISASGEQRIIFSNGQIE-VHAADHKRASFQMVL 529
R DP+ RE W G +T+ ++ F G IE V A+ ++ A QM L
Sbjct: 50 RALDPEAALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPL 105
>At5g62000.1 68418.m07782 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 365 RYFDPKNEHVREEWRFPDGAALTISASGEQRIIFSNGQIE-VHAADHKRASFQMVL 529
R DP+ RE W G +T+ ++ F G IE V A+ ++ A QM L
Sbjct: 50 RALDPEAALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPL 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,841
Number of Sequences: 28952
Number of extensions: 328577
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -