Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00839
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   2.1  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    27   2.8  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   3.7  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   8.5  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   8.5  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   8.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   8.5  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 484 FFNIVHQIYYHLYTNNKDKGLFASCTLRPT 573
           + N++ Q++Y  YT+ + +G+ +     PT
Sbjct: 73  YINMLEQVFYMYYTDKRHRGVISKKNAEPT 102


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 730 NTTFKALQTVSHKQQHVPFKQDRKT 656
           N   ++L T+ H   + PFK+D KT
Sbjct: 763 NAELRSLDTIDHLWTYFPFKKDLKT 787


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 433 CHKNIPCRYRNRMYF 477
           CH  IP RY+ ++YF
Sbjct: 477 CHDRIPIRYKGQLYF 491


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 732 KTQHLKHYKQFHTNSNMYHLSKTGKL 655
           ++Q  ++ + +H +  MY L+KTG++
Sbjct: 692 ESQGAENIRDWHIDERMYRLNKTGRI 717


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 651 LRACSDINAIHLKKL 607
           LR CS+I+ +HLK+L
Sbjct: 152 LRICSEISEVHLKRL 166


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = +1

Query: 418 LPQHFCHKNIPCRYRNRMYFLFFFNIVHQIYYHLYTNNKDKG 543
           LP H        +YR   Y L F  I   +  H    N   G
Sbjct: 130 LPSHVAEDRTAQQYRQNKYQLHFSRITFDLLLHFLFENVSNG 171


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 424  QHFCHKNIPCRYRNRMYFLFFFNIVHQIYYHLY 522
            +HFC  N+   +    Y +FF      +Y + Y
Sbjct: 1069 EHFCKSNLQLFFSTDTYVIFFEPNTENVYINSY 1101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,395
Number of Sequences: 5004
Number of extensions: 51038
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)