Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00839
         (736 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M23391-1|AAA28487.1|  868|Drosophila melanogaster DNA-binding pr...    31   2.2  
AY058690-1|AAL13919.1|  869|Drosophila melanogaster LD40824p pro...    31   2.2  
AE014297-4265|AAF56815.1|  869|Drosophila melanogaster CG1454-PA...    31   2.2  

>M23391-1|AAA28487.1|  868|Drosophila melanogaster DNA-binding
           protein protein.
          Length = 868

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 735 RKTQHLKHYKQFHTNSNMYHLSKTGKLY-LRACSDI-NAIHLKK 610
           ++  HL+ ++++H  +  Y   K GK+Y    C  + N +HL++
Sbjct: 395 QERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQ 438


>AY058690-1|AAL13919.1|  869|Drosophila melanogaster LD40824p
           protein.
          Length = 869

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 735 RKTQHLKHYKQFHTNSNMYHLSKTGKLY-LRACSDI-NAIHLKK 610
           ++  HL+ ++++H  +  Y   K GK+Y    C  + N +HL++
Sbjct: 396 QERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQ 439


>AE014297-4265|AAF56815.1|  869|Drosophila melanogaster CG1454-PA
           protein.
          Length = 869

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 735 RKTQHLKHYKQFHTNSNMYHLSKTGKLY-LRACSDI-NAIHLKK 610
           ++  HL+ ++++H  +  Y   K GK+Y    C  + N +HL++
Sbjct: 396 QERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQ 439


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,018,417
Number of Sequences: 53049
Number of extensions: 483383
Number of successful extensions: 1028
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)