Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00839
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-6|AAB69882.1|  290|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF016419-6|AAG24052.1|  223|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF016419-5|AAG24049.1|  280|Caenorhabditis elegans Hypothetical ...    28   6.0  

>AF022967-6|AAB69882.1|  290|Caenorhabditis elegans Hypothetical
           protein C13A2.10 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 693 NSNMYHLSKTGKLYLRACSDINAIHLKKLF 604
           N ++Y  +  GK Y  A S  N IH+ K+F
Sbjct: 133 NKDLYESTLGGKFYNYAVSGQNGIHISKIF 162


>AF016419-6|AAG24052.1|  223|Caenorhabditis elegans Hypothetical
           protein F07G11.7 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 693 NSNMYHLSKTGKLYLRACSDINAIHLKKLF 604
           N ++Y  +  GK Y  A S  N IH+ K+F
Sbjct: 126 NKDLYESTLGGKFYNYAVSGQNGIHISKIF 155


>AF016419-5|AAG24049.1|  280|Caenorhabditis elegans Hypothetical
           protein F07G11.2 protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 693 NSNMYHLSKTGKLYLRACSDINAIHLKKLF 604
           N ++Y  +  GK Y  A S  N IH+ K+F
Sbjct: 123 NKDLYESTLGGKFYNYAVSGQNGIHISKIF 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,839
Number of Sequences: 27780
Number of extensions: 284402
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)