Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00839
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.1  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 732 KTQHLKHYKQFHTNSNMYHLSKTGKLYLRACS 637
           +  HLK + + HT    YH S   + +++  +
Sbjct: 21  RDHHLKTHMRLHTGEKPYHCSHCDRQFVQVAN 52


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 541 LYLYYSCTNGNKFDEQY*KKKENTFYFDNDKV 446
           +Y+Y    NG K  E   +  EN  Y    K+
Sbjct: 39  MYVYEEIINGKKLTEIINETHENVKYLPGHKL 70


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 321 RAMDRGTIRNSLIFLKRKVKKKQTKIYYS 235
           R  D GT+  +L+F++ K K     ++ S
Sbjct: 444 RENDSGTLGGTLVFVEMKKKADFIAVFLS 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,809
Number of Sequences: 438
Number of extensions: 3877
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)