Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00839
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36060.1 68418.m04344 hypothetical protein                          28   5.6  
At5g18680.1 68418.m02217 F-box family protein / tubby family pro...    28   7.4  
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ...    27   9.8  
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ...    27   9.8  

>At5g36060.1 68418.m04344 hypothetical protein
          Length = 165

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 430 FCHKNIPCRYRNRMYFLFFFNIVHQIYYHLYTNNKD 537
           +  + + C   +R ++  ++++ H IYYH +T   D
Sbjct: 54  YSKETLSCVRLDRSWYFMWWSMPHSIYYHFFTKCLD 89


>At5g18680.1 68418.m02217 F-box family protein / tubby family
           protein similar to phosphodiesterase (GI:467578) [Mus
           musculus]; similar to Chain A, C-Terminal Domain Of
           Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
           contains Pfam PF00646: F-box domain and Pfam PF01167:
           Tub family
          Length = 389

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 6/34 (17%)
 Frame = +1

Query: 511 YHLY---TNN-KDKGLF--ASCTLRPTSCTNFMI 594
           YHLY   TN+  D G F  A+C L+ T+CT+++I
Sbjct: 124 YHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYII 157


>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
           (gb|AAC32062.1)
          Length = 278

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 550 QKGLYLYYSCTNGNKFDEQ 494
           + G +LYY+C +GN F+ Q
Sbjct: 139 ESGAHLYYNCPSGNYFEYQ 157


>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
           (PRC2B) (PRS1) identical to GB:AAC32063 from
           [Arabidopsis thaliana] (Genetics 149 (2), 677-692
           (1998)); identical to cDNA proteasome subunit prc2b
           GI:2511585
          Length = 277

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 550 QKGLYLYYSCTNGNKFDEQ 494
           + G +LYY+C +GN F+ Q
Sbjct: 139 ESGAHLYYNCPSGNYFEYQ 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,035
Number of Sequences: 28952
Number of extensions: 234072
Number of successful extensions: 444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)