Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00838
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 118 7e-28
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 46 4e-06
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 43 5e-05
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 27 2.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.0
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 6.6
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 8.8
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.8
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 118 bits (285), Expect = 7e-28
Identities = 74/201 (36%), Positives = 100/201 (49%), Gaps = 5/201 (2%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSISASSARRLYFSVV*KCPLR----STNLP 332
NPLF RP++F IGQ IQP RDLSRFV+WP RR ++ K P L
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 333 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQTQSQ 512
++ + +++ T +S + P
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS---KKPYNVKYGLNHVV 140
Query: 513 AGREEEGALVV-IAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 689
A E + A +V IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT LA+
Sbjct: 141 ALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAV 200
Query: 690 TNVESGDRASFSKVVEAIKTN 752
T V D+ + +V A+ N
Sbjct: 201 TEVREEDKNELASIVSAVDAN 221
Score = 70.1 bits (164), Expect = 3e-13
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397
L + K +YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 46 LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +3
Query: 510 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 689
+A R+ E LV++A D+ P++++ +P LC VPY K LG + K T +
Sbjct: 63 KAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVM 122
Query: 690 TNVESGDRASFSKVVE 737
V G + SKV E
Sbjct: 123 I-VPGGKKKDMSKVEE 137
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 540 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 650
+V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 51 IVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 152 QEDRESSLREEAKELCHWSGHSANSGLVQICKMAQYIRIQRQKAVLQRRL 301
+E E SL+EE ++ C W H + + A+ +++ R+ L RL
Sbjct: 115 KERLEVSLKEEHQDNCLWRLHKFPPDIYHLSVSAELVQVGRRFNSLSTRL 164
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Frame = -3
Query: 521 STSL-GLCLCRIGWC 480
+TS+ LCLC IGWC
Sbjct: 2320 ATSIENLCLCYIGWC 2334
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 278 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 379
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 262 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 351
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 460 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 290
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,603
Number of Sequences: 5004
Number of extensions: 57219
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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