Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00838
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 114 8e-26
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 114 8e-26
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 73 3e-13
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 44 1e-04
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 42 4e-04
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 42 5e-04
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 42 7e-04
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.98
07_03_1422 + 26462871-26463434,26463772-26463897 31 1.3
07_03_1414 - 26403361-26403969 31 1.3
07_03_1413 - 26396426-26396890 31 1.3
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 29 3.0
04_04_0188 - 23433753-23436572 29 3.0
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 29 3.0
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 29 4.0
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 6.9
02_02_0652 - 12651163-12653210,12653327-12653627 28 9.2
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 114 bits (274), Expect = 8e-26
Identities = 51/77 (66%), Positives = 65/77 (84%)
Frame = +3
Query: 522 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 701
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L LT V+
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVK 200
Query: 702 SGDRASFSKVVEAIKTN 752
+ D+ FSK++EAIK N
Sbjct: 201 NEDKLEFSKILEAIKAN 217
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 394
L + K + +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
Score = 52.4 bits (120), Expect = 4e-07
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSI 260
NPLFEKRPK F IG + P +DL RFV+WP +
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 53
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 114 bits (274), Expect = 8e-26
Identities = 50/77 (64%), Positives = 66/77 (85%)
Frame = +3
Query: 522 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 701
+ + LVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT V+
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVK 185
Query: 702 SGDRASFSKVVEAIKTN 752
+ D+ FSK++EAIK+N
Sbjct: 186 NEDKLEFSKILEAIKSN 202
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
NPLFEKRPK F IG + P +DL RFVRWP
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52
Score = 51.2 bits (117), Expect = 9e-07
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +2
Query: 260 IRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 394
+RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 55 VRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 72.5 bits (170), Expect = 3e-13
Identities = 39/77 (50%), Positives = 51/77 (66%)
Frame = +3
Query: 522 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 701
+ + LVVIAHDVDPIELV++LPALCRKM +VH+KT + L LT V+
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCLTTVK 170
Query: 702 SGDRASFSKVVEAIKTN 752
+ D+ FSK++EAIK N
Sbjct: 171 NEDKLEFSKILEAIKAN 187
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 394
L + K + +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 52.4 bits (120), Expect = 4e-07
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSI 260
NPLFEKRPK F IG + P +DL RFV+WP +
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 37
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 519 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALT 692
R + L +IA ++ PI+++ +P LC + +PY V K L R TC L LT
Sbjct: 57 RRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLT 116
Query: 693 NVESGDRASFSKVVEAIKTN 752
G+ V E +KT+
Sbjct: 117 KPAKGELE--EDVKEKLKTD 134
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 519 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALT 692
R L VIA ++ PI+++ +P LC + +PY V K L R TC L +T
Sbjct: 57 RRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMT 116
Query: 693 NVESGD 710
G+
Sbjct: 117 KPAKGE 122
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 540 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 713
VV+A D +P+E++L LP L VPY V K LG V R C +N S R
Sbjct: 52 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASNLR 111
Query: 714 ASFSKVVEAIK 746
+ + AI+
Sbjct: 112 DPINNLKVAIE 122
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 540 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 713
VV+A D +P+E++L LP L VPY V K LG V R C +N S +
Sbjct: 54 VVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLK 113
Query: 714 ASFSKVVEAIK 746
+ +AI+
Sbjct: 114 TPIQNLKDAIE 124
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 262 PHPAPEGCTSASSESAPSDQP 324
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 293 AEVQPSGAGCGYTGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 135
A +P+ + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 68 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1414 - 26403361-26403969
Length = 202
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -3
Query: 293 AEVQPSGAGCGYTGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 135
A +P+ + P + G++ + + +T G+ L P LEE + GL L+D
Sbjct: 70 AATKPTALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>07_03_1413 - 26396426-26396890
Length = 154
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 293 AEVQPSGAGCGYTGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 135
A +P+ + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 22 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -1
Query: 511 WDCV--CAGSDG-VGPLWWRLIFLGNLSFSSFPQ 419
W CV C G V WW L+FL N +SFPQ
Sbjct: 64 WSCVDSCCWLVGCVCSAWWLLLFLYNAMPASFPQ 97
>04_04_0188 - 23433753-23436572
Length = 939
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 215 SANSGLVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLD 343
SA + L Q+CK RQ A R + PPP + + LD
Sbjct: 21 SAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLD 63
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 471 RGPTPSDPAQTQSQAGREEEGALVVI 548
R PTP+ P QT S + REEE +L +
Sbjct: 135 RSPTPAAPPQTASVSQREEEKSLASV 160
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 469 KEAQHHPIRHKHSPKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVK 606
+EA H + K VE+ K +S + L+ L W ++C RY ++
Sbjct: 343 QEADHLRQENDKLAKEVEQLKTDRFSDVEELVYLKWINACLRYELR 388
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 210 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 118
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
>02_02_0652 - 12651163-12653210,12653327-12653627
Length = 782
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Frame = -3
Query: 302 SDDAEVQPSGAGCGYTGPSYKS-GQVPSWLNA-------LTNGKVLWPLLEERIHDL 156
SD + PS G G+TG + + G++PSWL A + +VL+P+ E +H +
Sbjct: 31 SDVQRLDPSIGG-GFTGGACQVFGEMPSWLGAGAGAVLRVQVSQVLYPMTSEVLHQV 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,830,341
Number of Sequences: 37544
Number of extensions: 448290
Number of successful extensions: 1529
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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