Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00838
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 106 2e-23
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 2e-23
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 45 6e-05
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 38 0.012
SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25) 29 4.1
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09) 29 5.4
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 7.1
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 7.1
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 9.4
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 106 bits (254), Expect = 2e-23
Identities = 46/76 (60%), Positives = 61/76 (80%)
Frame = +3
Query: 525 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 704
++ LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V
Sbjct: 59 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQ 118
Query: 705 GDRASFSKVVEAIKTN 752
D+ S + ++E++KTN
Sbjct: 119 EDKNSLNNLIESVKTN 134
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 106 bits (254), Expect = 2e-23
Identities = 46/76 (60%), Positives = 61/76 (80%)
Frame = +3
Query: 525 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 704
++ LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQ 209
Query: 705 GDRASFSKVVEAIKTN 752
D+ S + ++E++KTN
Sbjct: 210 EDKNSLNNLIESVKTN 225
Score = 71.7 bits (168), Expect = 6e-13
Identities = 31/56 (55%), Positives = 43/56 (76%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397
L + + +Y+++QRQK++L +RLKVPP INQFTQ LD+ + LFK+L KYRPET
Sbjct: 51 LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPET 106
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
NPL EKRP+NF IG IQP RDLSRFVRWP
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWP 58
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 540 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 713
+V+A D +P+E++L LP LC VPY V+ K+ LG V R C N S +
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATGVTRPVIACAVTVNEGSQLK 172
Query: 714 ASFSKVVEAIK 746
+ AI+
Sbjct: 173 PQIQTLQNAIE 183
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 510 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 638
+A R+ E V++A DV PI+++ +P +C +PY V K
Sbjct: 108 KALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)
Length = 305
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 523 KKKAHLWSSLMMLIPLSWFSSCQRYAVKWAYHTALSRASP 642
+K + +W SL+ ++ L W + A +W + +ASP
Sbjct: 61 RKLSKMWKSLLKVVDLPWDTPAATTAPEWIMGPSFPQASP 100
>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
Length = 1508
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -2
Query: 684 LSMCMSCGVQVHRGGTCP*--QCSMVRPFYGITLAGREPAQW 565
L C+ C +Q H G + MVRP+ G EPA W
Sbjct: 1187 LLACLFCRLQSHEDGVTVDFSRMKMVRPYEGAIRRSFEPAMW 1228
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 727 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 626
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 475 PLWWRLIFLGNLSFSSFPQPLFPG 404
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 286 TSASSESAPSDQPIYPDTG 342
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 571 SWFSSCQRYAVKWAYHTALSRASPASVHLYTARHAHA*L*QMWSL 705
+WF V+W YH + +S S+++YT L ++WS+
Sbjct: 2891 TWFKPSSTCRVRWFYH--MMGSSMGSLNVYTRTSMSGPLSRVWSV 2933
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,871,770
Number of Sequences: 59808
Number of extensions: 468387
Number of successful extensions: 1363
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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