Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00838
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 116 1e-26
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 89 2e-18
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 71 7e-13
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 54 1e-07
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 44 9e-05
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 43 3e-04
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.031
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 33 0.22
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 33 0.22
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 31 0.88
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ... 30 2.0
U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (gr... 28 6.2
U41534-4|AAB47596.1| 323|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 28 6.2
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 28 6.2
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 28 6.2
Z68882-10|CAA93111.1| 397|Caenorhabditis elegans Hypothetical p... 28 8.2
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 8.2
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 116 bits (280), Expect = 1e-26
Identities = 68/197 (34%), Positives = 94/197 (47%), Gaps = 1/197 (0%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSISASSARRLYFSVV*KCPLRSTNLPRHWT 344
NPLFEKR +NF IGQ IQP +D++RFV+WP + K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 345 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQTQSQAGR 521
R AF + + +R T T ++
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 522 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 701
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 209
Query: 702 SGDRASFSKVVEAIKTN 752
D+++ +K+VE + N
Sbjct: 210 PEDKSALNKLVETVNNN 226
Score = 81.8 bits (193), Expect = 5e-16
Identities = 39/93 (41%), Positives = 52/93 (55%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 409
+ + K +YIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111
Query: 410 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTV 508
RPNT+R G NT+
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVRHGVNTI 144
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/72 (54%), Positives = 54/72 (75%)
Frame = +3
Query: 537 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 716
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D++
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKS 194
Query: 717 SFSKVVEAIKTN 752
+ +K+VE + N
Sbjct: 195 ALNKLVETVNNN 206
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397
+ + K +YIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 71.3 bits (167), Expect = 7e-13
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397
+ + K +YIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLD 343
+ + K +YIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 44.4 bits (100), Expect = 9e-05
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 537 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGD 710
++V+A D +P+E++L LP LC VPY V+ K+ LG V R N S
Sbjct: 53 IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQL 112
Query: 711 RASFSKVVEAIK 746
++ K+ E ++
Sbjct: 113 KSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/81 (23%), Positives = 41/81 (50%)
Frame = +3
Query: 504 QSQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCL 683
Q + R E+G + ++A +V PI++ +P +C + +PY + + +LG V + + L
Sbjct: 77 QKELRRNEKG-ICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSIL 135
Query: 684 ALTNVESGDRASFSKVVEAIK 746
+ + +V EA++
Sbjct: 136 IFVKPSGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 439 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 320
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 477 PTPSDPAQTQSQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 656
P+PS+P T + E +++ AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 657 VHRKTCT 677
+ K T
Sbjct: 508 QNHKFAT 514
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 477 PTPSDPAQTQSQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 656
P+PS+P T + E +++ AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 657 VHRKTCT 677
+ K T
Sbjct: 508 QNHKFAT 514
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 31.1 bits (67), Expect = 0.88
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +3
Query: 216 QPTRDLSRFVRWPSISASSARRLYFSVV*KCPLRSTNLPRHWTRL 350
Q +R +R RW S ++ S RR+ FS C RST+ PR RL
Sbjct: 441 QNSRIAARGARWRSEASRSCRRIPFST---CSTRSTSAPRVAIRL 482
>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
protein Y54E10A.11 protein.
Length = 1446
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +2
Query: 155 EDRESSLREEAKELCHWSGHSANSGLVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQ 334
+ RE L+E EL + S S C + + V +KV I+QF
Sbjct: 71 QTREKGLKE-LMELINTENSSIESSYEHFCGLVAQLTTDGSPTVRMLTMKV---ISQFLT 126
Query: 335 TLDKTTAKGLFKIL 376
L K+ +KGL KI+
Sbjct: 127 KLKKSASKGLKKII 140
>U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (grd
related) protein10 protein.
Length = 282
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Frame = +1
Query: 253 PVYPHPAPEGCTSAS-------SESAPSDQPIYPDTGQDYS*GP 363
P P P P GC+ + +++ DQPIY T Q Y+ P
Sbjct: 39 PACPPPPPSGCSGSGVRAVARGAKTMTFDQPIYSPTPQSYAQPP 82
>U41534-4|AAB47596.1| 323|Caenorhabditis elegans Hypothetical
protein C16A3.6 protein.
Length = 323
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +2
Query: 155 EDRESSLREEAKELCHWSGHSANSGLVQICKMAQYIRIQRQKAVLQRRLKVPP 313
+D +L + + +L HWS + + ++ ++ QY+ R+ AV + K+ P
Sbjct: 84 KDMNKALEQISDQLLHWSEYVRHKCKARLIRIHQYLIRMRKMAVRGNQKKLIP 136
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 511 WDCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 377
+D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 117 YDSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 511 WDCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 377
+D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 7 YDSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 511 WDCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 377
+D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 117 YDSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>Z68882-10|CAA93111.1| 397|Caenorhabditis elegans Hypothetical
protein C47E12.7 protein.
Length = 397
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 212 HSANSGLVQICKMAQYIRIQRQKAVLQRRL--KVPPPINQFTQTLDKTTAKGLF-KILEK 382
H ++ L+++CK Y+ + K +LQ L ++ IN FT +K F K L K
Sbjct: 43 HFDDADLMRLCKGLHYVMWMQDKMILQEELADRIGGLINIFTSEEEKVRFVACFLKSLSK 102
Query: 383 YRP 391
P
Sbjct: 103 EWP 105
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 312 LRSTNLPRHWTRLQLRA 362
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,045
Number of Sequences: 27780
Number of extensions: 341402
Number of successful extensions: 1063
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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