Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00838
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 120 1e-27
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 116 2e-26
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 46 2e-05
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 3e-04
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 3e-04
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 3e-04
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 4e-04
At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila m... 29 4.4
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.4
At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase fa... 28 5.8
At2g30890.1 68415.m03765 membrane protein, putative similar to m... 28 7.7
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 120 bits (288), Expect = 1e-27
Identities = 54/77 (70%), Positives = 66/77 (85%)
Frame = +3
Query: 522 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 701
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVK 199
Query: 702 SGDRASFSKVVEAIKTN 752
+ D+ FSK++EAIK N
Sbjct: 200 NEDKLEFSKILEAIKAN 216
Score = 71.7 bits (168), Expect = 5e-13
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 394
L + K + IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 43 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP-SISASSARRL 284
NPLFE+RPK F IG + P +DLSR+++WP SI +R+
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 116 bits (278), Expect = 2e-26
Identities = 53/77 (68%), Positives = 64/77 (83%)
Frame = +3
Query: 522 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 701
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVK 198
Query: 702 SGDRASFSKVVEAIKTN 752
+ D+ FSK++EAIK N
Sbjct: 199 NEDKLEFSKILEAIKAN 215
Score = 72.1 bits (169), Expect = 4e-13
Identities = 34/55 (61%), Positives = 42/55 (76%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 394
L + K + IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 42 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP-SISASSARRL 284
NPLFE+RPK F IG + P +DLSR+++WP SI +R+
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 519 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALT 692
R + L VIA ++ PI+++ LP LC + GVPY V K L R TC L +
Sbjct: 63 RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVML 122
Query: 693 NVESGD 710
GD
Sbjct: 123 KPAKGD 128
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 540 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 713
VV+A D +P+E++L LP L VPY V K LG V R C +N S +
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLK 145
Query: 714 ASFSKVVEAIK 746
+ + +AI+
Sbjct: 146 SQIQHLKDAIE 156
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 540 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 713
VV+A D +P+E++L LP L VPY V K LG V R C +N S +
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLK 113
Query: 714 ASFSKVVEAIK 746
+ + +AI+
Sbjct: 114 SQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 540 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 713
VV+A D +P+E++L LP L VPY V K LG V R C +N S +
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLK 113
Query: 714 ASFSKVVEAIK 746
+ + +AI+
Sbjct: 114 SQIQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 540 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 713
+V+A D +P+E++L LP L VPY V K LG V R C +N S +
Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLK 113
Query: 714 ASFSKVVEAIK 746
+ + +AI+
Sbjct: 114 SQIQHLKDAIE 124
>At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila
melanogaster, EMBL:AE003739
Length = 549
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 203 WSGHSANSGLVQICKMAQYIRIQRQKAVLQRRLKVPPPINQ 325
+ GHS N+ L++ +A+++ +K ++K PP + +
Sbjct: 312 YEGHSVNTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQK 352
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 490 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 332
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase
family protein / LACT family protein similar to
SP|P40345 Phospholipid:diacylglycerol acyltransferase
(EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae};
contains Pfam profile PF02450: Lecithin:cholesterol
acyltransferase (phosphatidylcholine-sterol
acyltransferase)
Length = 671
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -1
Query: 511 WDCV--CAGSDG-VGPLWWRLIFLGNLSFSSFPQ 419
W C+ C G V WW L+FL N +SFPQ
Sbjct: 48 WSCIDSCCWFIGCVCVTWWFLLFLYNAMPASFPQ 81
>At2g30890.1 68415.m03765 membrane protein, putative similar to
membrane protein SDR2 (GI:1747306) [Mus musculus]
Length = 257
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 487 PIRHKHSPKLVEKKKAH---LWSSLMMLIPLSWFS 582
PI K +PKLV + K H LW+++ +L+P+ S
Sbjct: 40 PISEKLNPKLVYEIKVHGFMLWAAMGVLMPIGIIS 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,016,813
Number of Sequences: 28952
Number of extensions: 330285
Number of successful extensions: 1065
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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