Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00837
         (713 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54H40 Cluster: Putative uncharacterized protein; n=3; ...    35   1.7  
UniRef50_Q95YD0 Cluster: Patched related family protein 4; n=2; ...    34   3.0  
UniRef50_A5DM62 Cluster: Putative uncharacterized protein; n=1; ...    34   4.0  
UniRef50_UPI0001509F87 Cluster: hypothetical protein TTHERM_0034...    33   7.0  
UniRef50_Q94ZI3 Cluster: Orf598; n=1; Schizophyllum commune|Rep:...    33   7.0  
UniRef50_Q14P11 Cluster: Putative uncharacterized protein; n=1; ...    33   9.2  
UniRef50_A0DVN5 Cluster: Chromosome undetermined scaffold_66, wh...    33   9.2  

>UniRef50_Q54H40 Cluster: Putative uncharacterized protein; n=3;
           Eukaryota|Rep: Putative uncharacterized protein -
           Dictyostelium discoideum AX4
          Length = 1419

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = -1

Query: 539 THLKFTS*FDTRQTSRDSVRRVKYSKYHEKETKVTSEITNGLKDKTQCLSLKSDRNKKIQ 360
           T  KF S  ++ + S+DS + VK S   + + KVT E    LK ++    +K +++KK++
Sbjct: 589 TKSKFESEHESEEESKDSKKNVKKSASKQSKKKVTQESDEELKSESD-EEIKKEKSKKVK 647


>UniRef50_Q95YD0 Cluster: Patched related family protein 4; n=2;
           Caenorhabditis|Rep: Patched related family protein 4 -
           Caenorhabditis elegans
          Length = 960

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 542 FTHLKFTS*FDTRQTSRDSVRRVKYSKYHEKETKVTSEITNG 417
           F H+ +TS F  R+  R+   ++ YS+Y +K  K+   +TNG
Sbjct: 684 FPHINYTSDFYDRKNLREFFSQLDYSQYRDK-VKILDNVTNG 724


>UniRef50_A5DM62 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 811

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +3

Query: 435 SNFGFLFMVFRIFHASDTIARGLSSIELRCKFKMCK*IHLICMVIIIGLFVNSPLK 602
           S FG++ +VFR+  A      GL ++     FKMC  I L+ + ++  L + SP++
Sbjct: 73  SLFGWISVVFRVTEAQVLEHAGLDAVVFLSFFKMC--IKLLAVCVLFSLCIISPIR 126


>UniRef50_UPI0001509F87 Cluster: hypothetical protein
           TTHERM_00348560; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00348560 - Tetrahymena
           thermophila SB210
          Length = 370

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -1

Query: 308 IIIISTFYLIM*WIILCLYIFFIMTYSYRYFIRNNEEKKK 189
           II  ++FY +   I+LCL ++++    YRY+   N E+++
Sbjct: 165 IIFRTSFYYMTFIIVLCLDVYYVGKICYRYYQNRNNEQEQ 204


>UniRef50_Q94ZI3 Cluster: Orf598; n=1; Schizophyllum commune|Rep:
           Orf598 - Schizophyllum commune (Bracket fungus)
          Length = 598

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
 Frame = -1

Query: 446 TKVTSEITNGLKDKTQCLSLKSDR--NKKIQLLYLVQF*KISLYRVNYIIIISTFYLIM* 273
           +K+  EI N +      L    D+   K  +LL L+    + ++ +NY I+   F +   
Sbjct: 199 SKIIQEIYNSINKNNYFLLRNLDKLLQKYPKLLNLIFV--LFVFAINYNIVSELFIIRTR 256

Query: 272 WIILCLYIFFIMTYSY-RYFIRNNEEKKKTFFVVYVMLIL 156
           ++ L L +F +++Y Y     RNN +K  +  ++ +   L
Sbjct: 257 FVALILQLFVLISYLYFSIETRNNLKKNSSLLIIKIKSFL 296


>UniRef50_Q14P11 Cluster: Putative uncharacterized protein; n=1;
           Spiroplasma citri|Rep: Putative uncharacterized protein
           - Spiroplasma citri
          Length = 252

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 260 CLYIFFIMTYS-YRYFIRNNEEKKKTFFVVY 171
           CLY+     Y+ Y YF+ NNEEK  T  ++Y
Sbjct: 184 CLYLLETYYYNLYPYFLENNEEKALTVAIIY 214


>UniRef50_A0DVN5 Cluster: Chromosome undetermined scaffold_66, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_66,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 428

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -1

Query: 509 TRQTSRDSVRRVKYSKYHEKETKVTSEITNGLKDKTQCLSLKSD 378
           ++ T  DS+ + K ++   K +++  + T  + DKTQ LSLK D
Sbjct: 237 SKLTPNDSISKSKINQNDSKSSELRRKSTGEISDKTQILSLKID 280


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,391,437
Number of Sequences: 1657284
Number of extensions: 10684416
Number of successful extensions: 24075
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24060
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)