Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00837
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.2  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    27   2.7  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.1  

>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/50 (28%), Positives = 31/50 (62%)
 Frame = -1

Query: 380 DRNKKIQLLYLVQF*KISLYRVNYIIIISTFYLIM*WIILCLYIFFIMTY 231
           DR++K++LL +    +I+++ +   III+   L++ +   C  I+F+ T+
Sbjct: 11  DRSRKLELLSI----RINIFGLQLNIIINLIPLVLLFAFFCPCIYFLHTF 56


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 230 SYRYFIRNNEEKKKTFFVVYVMLIL 156
           +YRYF RNN+++    F++   L+L
Sbjct: 538 AYRYFSRNNDKQLARLFLIKNFLVL 562


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 269  IILCLYIFFIMTYSYRYFIRNNEEKKK 189
            ++L + +FF+  Y+  Y++R + E K+
Sbjct: 1047 LLLIVPLFFLYLYNRAYYVRTSRELKR 1073


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,668
Number of Sequences: 5004
Number of extensions: 51986
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)