Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00837
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606...    28   8.5  
09_02_0159 + 5105272-5106360,5107605-5107769                           28   8.5  

>12_01_0991 - 10057736-10058249,10058412-10059241,10059266-10060633,
            10061785-10062327,10066274-10066498,10066590-10066640
          Length = 1176

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/64 (18%), Positives = 35/64 (54%)
 Frame = -1

Query: 332  ISLYRVNYIIIISTFYLIM*WIILCLYIFFIMTYSYRYFIRNNEEKKKTFFVVYVMLILP 153
            + L  ++  + ++  +++  W++LCL + F  ++   YF+  + ++KK +  V +   + 
Sbjct: 1109 VDLEHISLYLGMAIGFVLSLWVVLCL-LLFKTSWRKSYFMFVDRQQKKIYVSVKIRSAVL 1167

Query: 152  KKNI 141
            K+ +
Sbjct: 1168 KRKL 1171


>09_02_0159 + 5105272-5106360,5107605-5107769
          Length = 417

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 311 NLHDKVIFFKIVLNIKVVFSYYGLILMINIAFYLL 415
           NL D+V FFK  L +K  F+Y  ++ +   + Y L
Sbjct: 126 NLLDQVRFFKAELWVKFYFNYVPVVYLSEASIYAL 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,524,128
Number of Sequences: 37544
Number of extensions: 245970
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)