Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00837
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    34   0.088
Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical p...    31   0.82 
AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    28   7.6  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    28   7.6  
U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical p...    28   7.6  

>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 542 FTHLKFTS*FDTRQTSRDSVRRVKYSKYHEKETKVTSEITNG 417
           F H+ +TS F  R+  R+   ++ YS+Y +K  K+   +TNG
Sbjct: 684 FPHINYTSDFYDRKNLREFFSQLDYSQYRDK-VKILDNVTNG 724


>Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical
           protein F11E6.11 protein.
          Length = 201

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
 Frame = -1

Query: 482 RRVKYSKYHEKETKVTSEITNGLKDKTQCLSL--KSDRNKKIQLLYLVQF*KISLY---- 321
           R++KYS+  EK+ + T++I    ++KT  LS+  KS R     L  +  F   S++    
Sbjct: 96  RKIKYSQDIEKDIEQTTKIK---EEKTALLSIFQKSIRLSMFGLSIIGFFRSFSVFFNGS 152

Query: 320 ---RVNYIIIISTFYLIM*WIILCLYIFFIMTYS 228
                +Y++I  TF  ++ ++IL L IF I+ YS
Sbjct: 153 IMPDCSYLVIWPTF--VLSFLILLLSIFVIIYYS 184


>AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical
           protein Y45F10B.14 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 242 IMTYSYRYFI-RNNEEKKKTFFVVYVMLILP 153
           +++++YRY+I R  E ++KT  +V  +  LP
Sbjct: 107 VLSFAYRYYILRKPEPQRKTVLIVLFLTYLP 137


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 512  DTRQTSRDSVRRVKYSKYHEKETKVTSEITNGLKDKTQC 396
            DT +  R + RRVK  ++   E K   E    L DK QC
Sbjct: 1848 DTEKNWRKAERRVKEVEFQVVEEKKNEERLTELVDKLQC 1886


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 512  DTRQTSRDSVRRVKYSKYHEKETKVTSEITNGLKDKTQC 396
            DT +  R + RRVK  ++   E K   E    L DK QC
Sbjct: 1848 DTEKNWRKAERRVKEVEFQVVEEKKNEERLTELVDKLQC 1886


>U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical
           protein B0432.1 protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -1

Query: 287 YLIM*WIILCL---YIFFIMT-YSYRYFIRNNEEKKKTFFVVYVMLI 159
           Y+I+ W+I+ L   Y++  MT +  R F RN    K    ++Y ++I
Sbjct: 186 YIIIAWLIIFLTITYVYIFMTSFRIREFPRNERYHKNDHTLLYFIII 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,885
Number of Sequences: 27780
Number of extensions: 283227
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)