Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00837
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    26   0.31 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    26   0.31 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.71 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.71 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.71 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.71 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.9  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 264 NNPLHN*IKSRNYNNVIYTIK*YFSKLY 347
           NN +HN     NYNN  Y    Y  KLY
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 264 NNPLHN*IKSRNYNNVIYTIK*YFSKLY 347
           NN +HN     NYNN  Y    Y  KLY
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 264 NNPLHN*IKSRNYNNVIYTIK*YFSKLY 347
           NN +HN     NYNN  Y  K Y++  Y
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 264 NNPLHN*IKSRNYNNVIYTIK*YFSKLY 347
           NN +HN     NYNN  Y  K Y++  Y
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 264 NNPLHN*IKSRNYNNVIYTIK*YFSKLY 347
           NN +HN     NYNN  Y  K Y++  Y
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 264 NNPLHN*IKSRNYNNVIYTIK*YFSKLY 347
           NN +HN     NYNN  Y  K Y++  Y
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINY 114


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 343 CTKYKSCIFLLRSDFNDKH 399
           C +  SC + L+  F DKH
Sbjct: 11  CRRNFSCYYSLKRHFQDKH 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,290
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)