Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00837
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28180.1 68418.m03411 kelch repeat-containing F-box family pr...    31   0.76 
At1g30890.1 68414.m03779 integral membrane HRF1 family protein c...    28   5.3  

>At5g28180.1 68418.m03411 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif; contains
           Pfam PF00646: F-box domain
          Length = 352

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 293 TFYLIM*WIILCLYIFFIMTYSYRYFIRNNEEKKKTF 183
           +F+LI  W+ + L + F+++  Y+ F R  +EKK TF
Sbjct: 3   SFWLIFLWLFVVLVLLFVVSLLYKTFSR--KEKKLTF 37


>At1g30890.1 68414.m03779 integral membrane HRF1 family protein
           contains Pfam domain PF03878: Hrf1 family
          Length = 269

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 293 TFYLIM*WIILCLYIFFIMTYSYRYF--IRNNEEKKKTFFVVYVMLI 159
           ++Y +M W  LC  IF + T     F  +R+ +  K  + ++++ L+
Sbjct: 206 SYYALMPWTCLCTGIFLVKTMKRVLFAEVRSYDSSKHHYLLLFLALV 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,009,773
Number of Sequences: 28952
Number of extensions: 236268
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)