Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00836
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 35 0.057
02_05_0130 - 26070784-26070801,26071440-26072627 33 0.23
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 33 0.23
03_01_0055 + 466834-467147,467521-467590,467669-467713,467801-46... 31 0.93
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 31 1.2
05_04_0202 - 19010953-19013355 30 2.1
08_02_0796 - 21300251-21300373,21300846-21301721 29 2.8
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 29 2.8
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 29 3.7
04_03_0803 - 19835284-19836050,19836337-19836418 29 3.7
11_01_0343 - 2551995-2552951 29 4.9
05_02_0031 - 5832475-5832696,5832789-5833064,5833303-5833380,583... 29 4.9
03_03_0133 + 14727510-14727651,14727742-14728078,14728448-14728763 29 4.9
09_04_0748 + 19901687-19902460 28 6.5
05_04_0264 + 19537582-19537919,19539670-19539826,19539939-195400... 28 6.5
03_03_0023 + 13839421-13840326 28 6.5
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 28 8.6
07_01_0447 - 3377666-3378673 28 8.6
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 28 8.6
02_03_0102 - 15238808-15239437,15241609-15243264 28 8.6
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 35.1 bits (77), Expect = 0.057
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 190 PMGQARGAPPSPWQVSLPSCPPXHTKLSCRRNLVP 86
P+ +A+ PP+ Q LP+ PP H LSC + P
Sbjct: 27 PLSRAKTPPPALLQAILPTAPPKHHSLSCSGSQAP 61
>02_05_0130 - 26070784-26070801,26071440-26072627
Length = 401
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 233 DAPGDQPGQLVAAVTYGTGQGG--STVALASVPAL 135
DAPG PG LV+ V G G G ALA++PA+
Sbjct: 228 DAPGRLPGSLVSVVARGNGFAGPLQAAALAALPAM 262
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -3
Query: 266 RRPRHVLLPAPDAPGDQPGQLVAAVTYGTGQGGSTVALASVPALLSP 126
+ P V+LP DA D+P +VA+ + G GG T A+ P L++P
Sbjct: 489 KNPTAVILPTEDAKDDKPAPVVASFS-ARGPGGLTEAILK-PDLMAP 533
>03_01_0055 +
466834-467147,467521-467590,467669-467713,467801-467869,
468006-468059,469010-469120,469225-469358,469438-469477,
469790-469849,469934-470115,470290-470785
Length = 524
Score = 31.1 bits (67), Expect = 0.93
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +1
Query: 211 PGWSPGASGAGRRTCRGLRQRGPHEVM-----GRPEDERVGLRNHHLHYLRH-SQNKNVR 372
PGWS A + R+ C GL Q G + RP VGL H +H L N R
Sbjct: 281 PGWSCSADESSRQICAGL-QNGNLIIFDIRQTSRPLHSMVGLSTHPVHTLHTVIDNNGSR 339
Query: 373 KIL 381
K L
Sbjct: 340 KFL 342
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 283 HAGHVGVDRGTSFCPHPMPQATSPASL*RLSP-MGQARGAPPSPWQVSLPSCPPXHTKLS 107
HA GV G P P ++S +S SP + PPSP + S P P HT S
Sbjct: 76 HAASGGVMGGRDTSPSPSSYSSSSSSSSSSSPSVRHYHYYPPSPTRSSSPPTPAAHT-TS 134
Query: 106 C 104
C
Sbjct: 135 C 135
>05_04_0202 - 19010953-19013355
Length = 800
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +3
Query: 39 MVPNPRCNSLLQRTRLGTRFRLHDSFVCXGGQEGRDTCQGDGGAPLACPIGDSRYKLAGL 218
+V PR L R RFR D V G D G GG ++ + +R + GL
Sbjct: 23 VVARPRRAGLACAARSCYRFRTDDDGVVDVAVSGEDGDGGGGGYAVSVEVPGTRGREGGL 82
Query: 219 VAWGIGCGQ 245
V G G+
Sbjct: 83 VLRASGSGE 91
>08_02_0796 - 21300251-21300373,21300846-21301721
Length = 332
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = -1
Query: 277 GHVGVDRGTSFCPHPMPQATSPASL*RLSPMGQARG-------APPSPWQVSLPSCPP 125
GH VD F P P A PASL + + G R APPSP ++LP PP
Sbjct: 52 GHA-VDGCGEFMPSPAADAADPASL-KCAACGCHRNFHRRLPEAPPSPPLLALPPPPP 107
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 189 LWDRPGGLHRRPGKCPCPPVP---QXTRSCRAD 100
++DR L P CPCPP+P + RSC+ +
Sbjct: 729 IFDRVVALSVAPVICPCPPLPLESKCNRSCKVE 761
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 224 GDQPGQLVAAVTYGTGQGGSTVALASVPALLSPXAHEA-VVQTEPG 90
G P + +A + G G GG ASV ALL P A A V T+PG
Sbjct: 23 GLPPPRPLAGMDRGVGVGGGGGGDASVAALLLPSAPMAYAVVTDPG 68
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -2
Query: 204 CSGCHLWDRPG--GLHRRPGKCPCPPVP 127
C GC D G G HR P CP PP P
Sbjct: 234 CGGCGHGDCGGWCGGHRPPINCPAPPPP 261
>11_01_0343 - 2551995-2552951
Length = 318
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -3
Query: 185 GTGQGGSTVALASVPALLSPXAHEAVVQTEPGPKSGSLQQRIAARVRHH 39
G G GG A P A AV P P GSL R+ + V H
Sbjct: 75 GGGGGGDGYRAFFADAFPFPEAAAAVASAAPAPVPGSLPSRLVSAVDLH 123
>05_02_0031 -
5832475-5832696,5832789-5833064,5833303-5833380,
5833464-5833550,5833639-5833699,5833792-5833880,
5834001-5834098,5834197-5834296,5834876-5834953
Length = 362
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 274 HVGVDRGTSFCPHPMPQATSPASL*RLSPMGQARGAPPSPWQVSLPS 134
H+ +G FCP + ++P G GA P P V +PS
Sbjct: 60 HMSCFQGLLFCPEVASLLLHNFCIYHINPQGHELGAAPIPSDVPVPS 106
>03_03_0133 + 14727510-14727651,14727742-14728078,14728448-14728763
Length = 264
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = -3
Query: 308 SSSGRPMTSCGPRWRRPRHVLLPAPDAPGDQPGQLVAAVTYGTGQGGSTVALASV 144
SS + RW DA G G TYG G G T AL++V
Sbjct: 17 SSLSSSSAAAAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAV 71
>09_04_0748 + 19901687-19902460
Length = 257
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 212 GQLVAAVTYGTGQ--GGSTVALASVPALLSPXAHEAVVQTEPGP 87
G+L V G G+ GG VAL +PA LSP ++ PGP
Sbjct: 167 GRLRVPVEAGDGEDGGGGAVALPGLPA-LSPEGLPWFIKVGPGP 209
>05_04_0264 +
19537582-19537919,19539670-19539826,19539939-19540092,
19540281-19540417
Length = 261
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 241 PHPMPQATSPASL*RLSPMGQARGAPPSPWQVSLPSCPPXHTKLSCRR 98
PHP P +P + LS + A PS + + PP H LSC R
Sbjct: 4 PHPHPHPGAPLAARPLSALASFFLARPSS---TAAAPPPRHVTLSCSR 48
>03_03_0023 + 13839421-13840326
Length = 301
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 257 RHVLLPAPDAPGDQPGQLVAAVTYGTGQGGSTVALASVPALLSPXAHEAVVQTEPGPKSG 78
RH LP P AP + + + V +++A+ P +P A E V+ P +G
Sbjct: 7 RHARLPRPTAPTARRSRRLRVVAVALRTRPTSLAVPGFPPAPAP-APEHVLLPSPSVAAG 65
Query: 77 SLQQRIAARV 48
+ + +AA V
Sbjct: 66 AAEVLLAAGV 75
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 27.9 bits (59), Expect = 8.6
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Frame = -3
Query: 329 WFRNPTRSSSGRPM--TSCG-PRWRRPRHVLLPAPDAPGDQPGQLVAAVTYGTGQGGSTV 159
W P+R G P TS G PR+ R R+VLLP P + + P L+ + G G V
Sbjct: 72 WTPRPSRYG-GTPSISTSRGQPRFPRRRYVLLP-PGSLAESP-PLLDRICLAHGHSGG-V 127
Query: 158 ALASVPALLSPXAHEAVVQTEPGPKSGSLQQRIAARVRHHID 33
AL S +L+ P +V+ + S +Q R+ H+D
Sbjct: 128 ALTSA-SLVEPF----LVEEQHNSPSQDMQPRLVPEA--HLD 162
>07_01_0447 - 3377666-3378673
Length = 335
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = -2
Query: 201 SGC-HLWDRPGGLHRRPGKCPCPPVPQXTRSCRADG--TWSQVWFAAAANCSEGSAPYRF 31
+GC LW GG R P + P PP P+ S A G + Q+W A + P
Sbjct: 196 AGCVMLWPYFGGEERMPSEAP-PPPPEGDASPSAMGITLFDQMWRLALPAGATRDHPAAN 254
Query: 30 RFSSVSP 10
F SP
Sbjct: 255 PFGPESP 261
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +2
Query: 131 TGGQGHLPGRRWSPPGLSHR*QPLQAGRAGRLGHRVRAEGRAAVYANVARMRS 289
+GG G G W+ PG P A R++ EG A V R+ S
Sbjct: 117 SGGGGGRGGNVWAQPGRGRGGAPAPAPAPAPAARRIQDEGAARSSGTVERIAS 169
>02_03_0102 - 15238808-15239437,15241609-15243264
Length = 761
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 155 LASVPALLSPXAHEAVVQTEPGPKSGSLQQRIAARVRH 42
L S P LLS A +A + + +L + +++RVRH
Sbjct: 88 LRSAPPLLSLAASDAAALRDSSSSTAALAEALSSRVRH 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,670,530
Number of Sequences: 37544
Number of extensions: 512513
Number of successful extensions: 1994
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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