Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00836
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    56   2e-08
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    56   3e-08
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    30   1.5  
Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z50110-4|CAA90443.2|  203|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    28   7.8  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    28   7.8  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
 Frame = +3

Query: 9   AVILKKIEIDMVPNPRCNSLLQRTRLGTRFRLH-DSFVCXGGQEGR-DTCQGDGGAPLAC 182
           A  L++I + ++    C+SL     +G   R+H  S +C G   G+ D+CQGD G PL C
Sbjct: 193 APTLREIHVPLLSTLFCSSL--PNYIG---RIHLPSMLCAGYSYGKIDSCQGDSGGPLMC 247

Query: 183 PIGDSRYKLAGLVAWGIGCGQKDVP 257
              D  ++L G+V+WGIGC +  +P
Sbjct: 248 A-RDGHWELTGVVSWGIGCARPGMP 271


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 111 SFVCXGGQEGR-DTCQGDGGAPLACPIGDSRYKLAGLVAWGIGCGQKDVP 257
           S  C G  EG  D+CQGD G P AC   D  + LAG+++WG GC QK  P
Sbjct: 194 SAFCAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQP 243


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 108 DSFVCXGGQEGRDTCQGDGGAPLACPIGDS-RYKLAGLVAWGIGCGQ 245
           DSF C   +E ++ C GD G  L     DS R  +  +V++G  C Q
Sbjct: 257 DSF-CTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIVSYGSDCVQ 302


>Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 241 PHPMPQATSPASL*-RLSPMGQARGA-PPSPWQVSLPSCPP 125
           P P+P AT P+     ++P+     A PP+P Q S P  PP
Sbjct: 235 PAPVPTATKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRPP 275


>Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 241 PHPMPQATSPASL*-RLSPMGQARGA-PPSPWQVSLPSCPP 125
           P P+P AT P+     ++P+     A PP+P Q S P  PP
Sbjct: 235 PAPVPTATKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRPP 275


>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical protein
            C05A9.1 protein.
          Length = 1283

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 226  GASGAGRRTCRGLRQRGPHEVMGRPEDERVGLRNHHLHYLRHS 354
            G SG+G+ T   L +R  H V G  + +   + + +LH+LR S
Sbjct: 1071 GPSGSGKSTIISLLERFYHAVDGEVKIDEENVVDVNLHHLRES 1113


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -3

Query: 308  SSSGRPMTSCGPRWRRPRHVLLPAPDAPGDQPGQLVAAVTYGTGQGGSTVALASVPALLS 129
            +SS R +T  GP   R       AP AP  QP +  A  T    Q      L ++P  L+
Sbjct: 1021 ASSSRRVTEVGPPAPRTTEA---APPAPSSQPPRQFAVNTL-QHQQTKPDQLPNLPRNLA 1076

Query: 128  PXAHEAVVQ-TEPGP 87
                E  +Q  EPGP
Sbjct: 1077 AQIEEKCLQPVEPGP 1091


>Z50110-4|CAA90443.2|  203|Caenorhabditis elegans Hypothetical
           protein F18H3.1 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = +3

Query: 36  DMVPNPRCNSLLQRTRLGTRFRLHDSFVCXGGQEGRDTCQGDGGAPLACPIGDSRYKLAG 215
           D    PR N++ Q T      R+  + V    +EG   C G GGA    PI  ++     
Sbjct: 24  DNASYPRFNAVYQPTVRLDVGRMGKNVVIL--KEGERIC-GIGGAIATVPIVQNKAYFQV 80

Query: 216 LV----AWGIGCGQKDVP 257
            V     WGIG GQK  P
Sbjct: 81  TVQQTGTWGIGLGQKQSP 98


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -3

Query: 260  PRHVLLPAPDAPGDQPGQLVAAVTYGTGQGGSTVALASVPALLSPXAHEAVVQTEPGPKS 81
            P   +  + DA G   G      T GTG GGS   L++  A+ S  +     Q+  G  +
Sbjct: 1094 PPTTVSSSDDAGGKTGGTGATGGTGGTGSGGSATTLSTGDAVRSTTSGSGSGQSSTGSGA 1153

Query: 80   G 78
            G
Sbjct: 1154 G 1154


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -3

Query: 260  PRHVLLPAPDAPGDQPGQLVAAVTYGTGQGGSTVALASVPALLSPXAHEAVVQTEPGPKS 81
            P   +  + DA G   G      T GTG GGS   L++  A+ S  +     Q+  G  +
Sbjct: 1094 PPTTVSSSDDAGGKTGGTGATGGTGGTGSGGSATTLSTGDAVRSTTSGSGSGQSSTGSGA 1153

Query: 80   G 78
            G
Sbjct: 1154 G 1154


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 602 PY*NSNNVTQGVKKLHKIF 658
           P  NSNNVTQ +++L K+F
Sbjct: 13  PILNSNNVTQQIERLRKLF 31


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 602 PY*NSNNVTQGVKKLHKIF 658
           P  NSNNVTQ +++L K+F
Sbjct: 13  PILNSNNVTQQIERLRKLF 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,810,490
Number of Sequences: 27780
Number of extensions: 376111
Number of successful extensions: 1132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)