Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00836
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ...    31   0.77 
At3g48450.1 68416.m05289 nitrate-responsive NOI protein, putativ...    30   1.8  
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom...    29   4.1  
At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing ...    28   5.5  
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ...    28   5.5  
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ...    28   7.2  
At5g04470.1 68418.m00445 expressed protein                             28   7.2  
At4g35560.1 68417.m05053 expressed protein                             27   9.5  
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family...    27   9.5  
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    27   9.5  

>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
           identical to WIP2 protein [Arabidopsis thaliana]
           gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 383

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -1

Query: 253 TSFCPHPMPQATSPASL*RLSPMGQARGAPPSPWQVSLPSCPPXHTKL 110
           T+  PHP+P  T P+S       G  R  PP P   + P  PP    L
Sbjct: 26  TNPSPHPLPPVTPPSSFFFFPQSGDLRRPPPPP---TPPPSPPLREAL 70


>At3g48450.1 68416.m05289 nitrate-responsive NOI protein, putative
           similar to nitrate-induced NOI protein [Zea mays]
           GI:2642213
          Length = 89

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +1

Query: 274 GPHEVMGRPEDERVGLRN---HHLHYLRHSQNKNVRKILKRTCF 396
           GP  ++  P +E     N   HH H+ RHSQ    +K  K  CF
Sbjct: 47  GPESIVSPPRNEEPPKNNNNHHHNHHTRHSQTPRSKK--KWLCF 88


>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to Hrs [Rattus
           norvegicus] GI:8547026; contains Pfam profiles PF00790:
           VHS domain, PF03127: GAT domain
          Length = 506

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 235 PMPQATSPASL*RLSPM-GQARGAPPSPWQVSLPSCPPXHTKLSCRRNLVP 86
           P+PQ+ SP       P+  Q    PP+PW+   P   P    +S R N  P
Sbjct: 377 PVPQSKSPEHALFTKPVYDQTEQLPPAPWETQEPRKYP--PSMSARTNKRP 425


>At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing
           protein Dof zinc finger protein - Oryza
           sativa,PID:d1042342
          Length = 342

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -1

Query: 253 TSFCPHPMPQATSPASL*RLSPMGQARGAPPSPWQVSLPSCPPXHTKLSCRRN 95
           T+ CP P PQ   P      S  G+ +  P     V+ P C   +TK     N
Sbjct: 20  TNTCPKPQPQPLQPQQ--PPSVGGERKARPEKDQAVNCPRCNSTNTKFCYYNN 70


>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
           YT521-B-like family protein low similarity to cleavage
           and polyadenylation specificity factor 30 kDa subunit
           [Bos taurus] GI:2327052; contains Pfam profiles PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar),
           PF04146: YT521-B-like family; supporting cDNA
           gi|24415581|gb|AY140901.1|
          Length = 678

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 263 RPRHVLLPAPDAPGDQPGQLVAAV-TYGTGQGGSTVALASVPALLSPXAHEAVVQTEPGP 87
           R RH  LP P  P ++  Q +  + TY  G      A    P L      +  +Q +P  
Sbjct: 135 RYRHAKLPGPPPPVEEVLQKIQQLTTYNYGTNRLYQARNVAPQLQDRPQGQVPMQGQP-Q 193

Query: 86  KSGSLQQR 63
           +SG+LQQ+
Sbjct: 194 ESGNLQQQ 201


>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 500

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -3

Query: 278 GPRWRRPRHVLLPAPDAPGDQPGQLV--AAVTYGTGQGGS 165
           GP  R P H L P P  P      L+  AA    TG GGS
Sbjct: 350 GPTIRDPPHFLTPLPPQPAMSATALLQKAAQMGSTGSGGS 389


>At5g04470.1 68418.m00445 expressed protein
          Length = 127

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 220 TSPASL*RLSPMGQARGAPPSPWQVSLPSCPPXHTKLSCRRNLVPSL 80
           T+P S     P   A   PP P +   PS P      SC+R L+ SL
Sbjct: 34  TTPTSSDHKIPPTTATTPPPPPQKPRPPSTPSSLGIRSCKRKLMTSL 80


>At4g35560.1 68417.m05053 expressed protein 
          Length = 917

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 588 FKKDYSLCHSGIV*LPN-SERILQIGSVFR 502
           +KKD S+CH GI+   +  E+    GSVF+
Sbjct: 694 YKKDNSVCHEGIITSSSPREKKSMFGSVFK 723


>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
           protein contains proline-rich domains,
           INTERPRO:IPR000694
          Length = 310

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 166 PPSPWQVSLPSCPPXHT 116
           PPSP Q + PS PP HT
Sbjct: 28  PPSPPQPTNPSSPPPHT 44


>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 265 VDRGTSFCPHPMPQATSPASL*RLSPMGQARGAPP 161
           V+ G S  PHP P  ++ A L + + MG  +   P
Sbjct: 308 VNTGRSSFPHPSPAMSATALLQKAAQMGSTKSTTP 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,889,633
Number of Sequences: 28952
Number of extensions: 353844
Number of successful extensions: 1024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)