Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00834
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    69   5e-13
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    28   1.6  
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    27   3.7  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   4.9  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   4.9  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.5  
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    25   8.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.5  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 35/71 (49%), Positives = 48/71 (67%)
 Frame = +1

Query: 43  EPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAES 222
           E  T+  LAA P + +KQ+LGE L+P +      L+GKITGMLLE+ NSELL +LE   +
Sbjct: 570 ERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSA 629

Query: 223 LKAKVDEAVAV 255
           L  +V+EA+ V
Sbjct: 630 LNERVNEAIGV 640


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 64  LAAAPLQEQKQMLGERLF-PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVD 240
           L +A +Q+  +M G+  F P ++R H D  GK   +     +  LLH L    +   K++
Sbjct: 290 LESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALEGRSGHINLLHALTGQFATSFKIE 349


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 586 ENFRYIHFSLIYYLILWELALVLSF 660
           +NF Y+ F  ++ L++W++  + SF
Sbjct: 184 KNFAYLTFISLFVLVIWQILYLRSF 208


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 124 IQRMHPDLAGKITGMLLEID-NSELLHMLEHAESLKAKVDEAV 249
           +QR++P    ++ G LL+ID + EL+  L  +   +  VDE V
Sbjct: 801 VQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELV 843


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 433 KN*KWVMHSYVTLKSASSQTKIRNCHISTLRVNELFDFYID*EVYFKLKLFENFRYIHFS 612
           KN K V+    T+ S+    + R   +S++  +E+F   +       L++F NF  +   
Sbjct: 174 KNSKKVVPRLNTVNSSLDFLQNRTPRLSSILPDEIFTKRLP-----NLRIFSNFIKVCRP 228

Query: 613 LIYYLILW 636
           LIY L +W
Sbjct: 229 LIYMLFMW 236


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 484 SQTKIRNCHISTLRVNELFDFYID*EVYFKLKLFENFRYIHFSLIYYLILWELALV 651
           S T +  C I+ L +  +   + +   Y+KL     F +IH+ L++   L E+ L+
Sbjct: 15  SCTVVEKC-ITNLLITTILLCFFNATTYWKLFFGAMFDFIHYQLLFRNSLSEILLL 69


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +1

Query: 445 WVMHSYVTLKSASSQTKIRNCHISTLRVNELFDFYID 555
           W++H Y  +  AS+Q  +     +  +V  L   + D
Sbjct: 165 WILHVYTHVADASNQVAMAKAEANLTKVKTLLSAFCD 201


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 589 NFRYIHFSLIYYLILWELALVLSFIITFTSVF 684
           N   I ++L+YYLI+    L+ S I  FT  F
Sbjct: 317 NASSIIYTLMYYLIIAPTLLITSAICMFTIFF 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,519
Number of Sequences: 5004
Number of extensions: 47693
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)