Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00834
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 83 3e-16
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116... 77 1e-14
08_02_0163 + 13470178-13470335,13470635-13470656,13470885-134710... 76 3e-14
04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717... 73 3e-13
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 68 7e-12
09_06_0119 - 20969450-20969643,20969767-20970088,20970147-209703... 32 0.41
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153... 31 0.72
08_02_0222 + 14446967-14448310 30 1.7
12_01_0144 - 1097579-1097604,1097940-1098127,1098567-1098720,109... 30 2.2
02_03_0251 + 16849905-16851308 28 6.7
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/65 (56%), Positives = 50/65 (76%)
Frame = +1
Query: 55 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 234
+ +LA AP +EQK MLG RL+PL++R HPDLA KITGMLLE+ NSE++ +L + L AK
Sbjct: 440 NNLLATAPPEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAK 499
Query: 235 VDEAV 249
++E V
Sbjct: 500 IEECV 504
>09_01_0079 -
1159963-1160211,1160303-1160509,1160631-1160801,
1161732-1161869,1162184-1162273,1162354-1162431,
1162510-1163166,1163245-1163363,1164305-1164584
Length = 662
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/69 (52%), Positives = 51/69 (73%)
Frame = +1
Query: 55 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 234
+T LA A +Q+ MLGE L+PL+ ++ + A K+TGMLLE+D +E+LH+LE E+LKAK
Sbjct: 567 ATALANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAK 626
Query: 235 VDEAVAVCR 261
V EA+ V R
Sbjct: 627 VAEAMEVLR 635
>08_02_0163 +
13470178-13470335,13470635-13470656,13470885-13471055,
13471157-13471363,13471458-13471700
Length = 266
Score = 75.8 bits (178), Expect = 3e-14
Identities = 34/69 (49%), Positives = 52/69 (75%)
Frame = +1
Query: 55 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 234
++ LA +P +Q+ MLGE L+PL+ ++ D A K+TGMLLE+D +E+LH++E ++LKAK
Sbjct: 173 ASALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAK 232
Query: 235 VDEAVAVCR 261
V EA+ V R
Sbjct: 233 VAEAMEVLR 241
>04_04_0435 -
25170348-25170593,25170989-25171189,25171580-25171756,
25172284-25172418,25173131-25173262,25173292-25173369,
25173452-25174108,25174210-25174328,25175897-25176173
Length = 673
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/71 (49%), Positives = 53/71 (74%)
Frame = +1
Query: 49 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLK 228
LTS + A P ++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LE E+LK
Sbjct: 578 LTSALANANP-EQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALK 636
Query: 229 AKVDEAVAVCR 261
+KV EA+ V R
Sbjct: 637 SKVAEAMDVLR 647
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 68.1 bits (159), Expect = 7e-12
Identities = 32/82 (39%), Positives = 56/82 (68%)
Frame = +1
Query: 19 PAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELL 198
P +Q T LA+A ++Q+++LG+ LFPL++++ + A K+TGMLLE+D +E+L
Sbjct: 560 PVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVL 619
Query: 199 HMLEHAESLKAKVDEAVAVCRL 264
+++E ++L+ KV EA+ V L
Sbjct: 620 NLVESPDTLRDKVAEAMKVLEL 641
>09_06_0119 -
20969450-20969643,20969767-20970088,20970147-20970380,
20970659-20970789,20970874-20971147
Length = 384
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 37 GQEPLTSTMLAAAPLQEQKQMLGE 108
G +PLTST++A P+QEQ M E
Sbjct: 126 GYDPLTSTLVAVLPMQEQLNMFAE 149
>08_01_0181 +
1530623-1531626,1531723-1531902,1531998-1532177,
1532363-1532442,1532528-1532701,1533001-1533118,
1533223-1533301
Length = 604
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 115 FPLIQRMHPDLAGKITGMLL--EIDNSELLHMLEHAE-SLKAKVDEAVAVCRLI 267
F +QR+ P+ GKI G++L E D EL+ + E +L AK+++ A +I
Sbjct: 11 FARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAALTVI 64
>08_02_0222 + 14446967-14448310
Length = 447
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 445 WVMHSYVTLKSASSQTKIRNCHIS 516
WVMH Y +K A+ + R CHI+
Sbjct: 134 WVMHEYAVVKPAALGARHRACHIA 157
>12_01_0144 -
1097579-1097604,1097940-1098127,1098567-1098720,
1098825-1099092,1099310-1099550,1099669-1099833,
1099898-1100298
Length = 480
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 112 LFPLIQRMHPDLAGKITGMLLEIDNSEL 195
+F +Q + P+LA I GMLL DN+E+
Sbjct: 10 VFARLQALEPNLAPNIIGMLLTKDNNEM 37
>02_03_0251 + 16849905-16851308
Length = 467
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 10 APQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLI 126
AP PA H G L +T +A AP Q L +R PLI
Sbjct: 2 APPPAAHAAGLRVLRTTRVAPAPPAGQ-PALPKRALPLI 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,719,019
Number of Sequences: 37544
Number of extensions: 276025
Number of successful extensions: 824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -