Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00834
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)                      104   7e-23
SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        60   2e-09
SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   1e-05
SB_40169| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 718

 Score =  104 bits (250), Expect = 7e-23
 Identities = 50/66 (75%), Positives = 57/66 (86%)
 Frame = +1

Query: 37  GQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHA 216
           GQEPL  ++LAAA  QEQKQMLGERLFPLIQ  HPD+AGKITGMLLEIDN+ELLHMLE  
Sbjct: 425 GQEPLNPSVLAAATPQEQKQMLGERLFPLIQTNHPDMAGKITGMLLEIDNAELLHMLESR 484

Query: 217 ESLKAK 234
           ++L+ K
Sbjct: 485 DALQMK 490


>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 29/60 (48%), Positives = 41/60 (68%)
 Frame = +1

Query: 76   PLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAV 255
            PL   +Q LGERL+P +  + P LA +ITGMLLE+  ++LL +L   ++L  +VDEAV V
Sbjct: 1644 PLPYHRQSLGERLYPRVHALKPALASRITGMLLELSPAQLLLLLASEDTLVQRVDEAVDV 1703


>SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 35/54 (64%)
 Frame = +1

Query: 94  QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAV 255
           Q LG+R++  +Q+++P LA ++TGMLLE+   +L H+L+  E L   +  A  V
Sbjct: 79  QSLGDRVYGTVQQLYPTLAERVTGMLLEMPADQLNHLLDSREGLLEHIHTAAHV 132



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = +1

Query: 85  EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHML 207
           EQK+ +GE++   I+++HP  A  ITGMLLE+   +LL+ +
Sbjct: 288 EQKEFIGEKIHDEIRKLHPGHADVITGMLLEMGVDQLLNTI 328



 Score = 35.9 bits (79), Expect = 0.034
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 82  QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAV 249
           ++ K ++GE ++  +   +P  A KITGMLLE++   L  + +  + L  +  EAV
Sbjct: 174 EDLKSIIGENIYSQLVEKYPKDADKITGMLLEMELDLLQKVSQDPDLLGQRATEAV 229



 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/52 (28%), Positives = 31/52 (59%)
 Frame = +1

Query: 100 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAV 255
           LG +++ ++  ++P+ A KITGMLL+    E+  +L   + L  ++  A ++
Sbjct: 15  LGAKIYDVVFEIYPNEADKITGMLLDGGEEEVASLLSDEKRLNERIIAAASL 66


>SB_40169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 454 HSYVTLKSASSQTKIRNCHISTLR-VNE 534
           H  VTLK+ +   K+++CH  ++R +NE
Sbjct: 7   HEIVTLKNINELQKLKDCHFESIREINE 34


>SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 6   TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVSTYSEN 134
           TS+TTS+    T TS      +STT  + T +  TT  TY  +
Sbjct: 52  TSTTTSTTTSTTNTSTTTSTTTSTTNTSTTTSTTTTTITYKRD 94


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 6   TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVST 122
           TS TTS++ P T T       +++ P T T   G+T +T
Sbjct: 12  TSITTSTSTPSTSTPRAGSTTNTSAPSTSTPRTGSTTTT 50


>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 191 SELSISKSIPVIFPAKSGCIL*ISGNSRSPSICFCSWSGAAASIVEVRGSCPWICTAG 18
           SEL +   + V  PA +G I   S  +     C+   SG A S  + + +C ++C+AG
Sbjct: 204 SELWLRSHVSVTKPASTGRIPNKSHQAIPKGFCYRFHSGKACSGCDFKHAC-YLCSAG 260


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 30   YPRTRTSDLYYACSSTTPGTETDAWGTTVSTYSENAP*F 146
            YPR R  D Y+ C   T    TD    + S+  + +P F
Sbjct: 2522 YPRIRDLDFYWFCYKKTRNVTTDIDALSASSPLQQSPEF 2560


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,485,976
Number of Sequences: 59808
Number of extensions: 317904
Number of successful extensions: 919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)