Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00834
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U24123-1|AAA65224.1|  646|Caenorhabditis elegans polyadenylate-b...    99   4e-21
AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical ...    99   4e-21
AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical ...    99   4e-21
AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical ...    99   4e-21
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    93   2e-19
AF067948-7|AAC17699.1|  643|Caenorhabditis elegans Hypothetical ...    32   0.37 
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z75540-4|CAA99849.1|  169|Caenorhabditis elegans Hypothetical pr...    31   0.64 
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    28   7.9  

>U24123-1|AAA65224.1|  646|Caenorhabditis elegans
           polyadenylate-binding protein protein.
          Length = 646

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 52/83 (62%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
 Frame = +1

Query: 13  PQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 186
           PQ  V I GQEPLTS MLAAA  QEQKQ+LGER++ LI++++P    AGKITGM+LEIDN
Sbjct: 558 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 616

Query: 187 SELLHMLEHAESLKAKVDEAVAV 255
           SEL+ ML+ +E  ++KVDEA +V
Sbjct: 617 SELIMMLQDSELFRSKVDEAASV 639


>AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2c protein.
          Length = 586

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 52/83 (62%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
 Frame = +1

Query: 13  PQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 186
           PQ  V I GQEPLTS MLAAA  QEQKQ+LGER++ LI++++P    AGKITGM+LEIDN
Sbjct: 498 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 556

Query: 187 SELLHMLEHAESLKAKVDEAVAV 255
           SEL+ ML+ +E  ++KVDEA +V
Sbjct: 557 SELIMMLQDSELFRSKVDEAASV 579


>AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2b protein.
          Length = 583

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 52/83 (62%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
 Frame = +1

Query: 13  PQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 186
           PQ  V I GQEPLTS MLAAA  QEQKQ+LGER++ LI++++P    AGKITGM+LEIDN
Sbjct: 495 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 553

Query: 187 SELLHMLEHAESLKAKVDEAVAV 255
           SEL+ ML+ +E  ++KVDEA +V
Sbjct: 554 SELIMMLQDSELFRSKVDEAASV 576


>AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2a protein.
          Length = 646

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 52/83 (62%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
 Frame = +1

Query: 13  PQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 186
           PQ  V I GQEPLTS MLAAA  QEQKQ+LGER++ LI++++P    AGKITGM+LEIDN
Sbjct: 558 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 616

Query: 187 SELLHMLEHAESLKAKVDEAVAV 255
           SEL+ ML+ +E  ++KVDEA +V
Sbjct: 617 SELIMMLQDSELFRSKVDEAASV 639


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 48/82 (58%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
 Frame = +1

Query: 16  QPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPD--LAGKITGMLLEIDNS 189
           Q  + I GQE LTS MLA A  QEQKQ+LGER++ LI++M P+   AGKITGM+LEIDN+
Sbjct: 593 QSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNA 652

Query: 190 ELLHMLEHAESLKAKVDEAVAV 255
           EL+ ML+ AE  ++KV+EA  V
Sbjct: 653 ELIMMLQDAELFRSKVEEAFGV 674


>AF067948-7|AAC17699.1|  643|Caenorhabditis elegans Hypothetical
           protein T27C4.2 protein.
          Length = 643

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 4   PPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL 147
           PP P   V  +  EP T+T L   PL+  +++LGE +   ++ +  D+
Sbjct: 251 PPQPTTTVPQEAAEPTTTTTLQ--PLESTRRILGEEIEKSVENLEKDI 296


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 158 IFPAKSGCIL*ISGNSRSPSICFCSWSGAAASIVEVRGSCPWICTAGCG 12
           ++P   G  + + G++  P IC+ + + A A + +++     IC   CG
Sbjct: 56  LYPVGGGGAIVVGGDNARPFICYRTGNAAGAVMDDIKADAISICPKSCG 104


>Z75540-4|CAA99849.1|  169|Caenorhabditis elegans Hypothetical
           protein F37D6.3 protein.
          Length = 169

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 28  HIQGQEPLTSTMLAAAPLQEQKQMLGERLF 117
           H+  Q P    MLAAA  QEQ  +LG+R++
Sbjct: 96  HMMAQGPGVYPMLAAAAPQEQNHLLGDRIY 125


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 24/69 (34%), Positives = 31/69 (44%)
 Frame = -3

Query: 221 DSACSNI*RSSELSISKSIPVIFPAKSGCIL*ISGNSRSPSICFCSWSGAAASIVEVRGS 42
           DSAC N+ RS      + +P+  PA   CI  I G +     C  S S  +  I +V  S
Sbjct: 94  DSACINLVRSGPSCDQQCMPLCLPA---CINAIQGPTECAPQCMPSCS--SNCIQQVFPS 148

Query: 41  CPWICTAGC 15
           CP  C   C
Sbjct: 149 CPQQCQPVC 157


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 6   TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGT-TVSTYSENAP 140
           T+S+T+S    T T+    + S++TP T T    T T S+ S +AP
Sbjct: 521 TTSSTTSTEASTPTTSTSTSTSTSTPSTTTSTTSTSTTSSTSSSAP 566


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 6   TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVST 122
           T+STT++  P T T+      +STT  T T    TT ST
Sbjct: 70  TTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTTTTST 108


>Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical
           protein F29C12.1b protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 202 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 101
           Y +  N QF   YQ F QP Q  +++  +   PQ
Sbjct: 338 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 371


>Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical
           protein F29C12.1a protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 202 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 101
           Y +  N QF   YQ F QP Q  +++  +   PQ
Sbjct: 340 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 373


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +3

Query: 6   TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVSTYS 128
           TS+TTS     T TS      S++TP T T    TT ST S
Sbjct: 283 TSTTTSVVTTTTVTSTTEPTTSTSTPTTTTTMQTTTPSTTS 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,270,015
Number of Sequences: 27780
Number of extensions: 267036
Number of successful extensions: 921
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)