Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00834
(739 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 82 3e-16
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 77 9e-15
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 75 5e-14
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 74 1e-13
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 73 3e-13
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 66 2e-11
At3g19350.1 68416.m02455 polyadenylate-binding protein-related /... 62 5e-10
At3g28930.1 68416.m03613 avrRpt2-induced AIG2 protein (AIG2) ide... 31 0.60
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 30 1.4
At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family... 30 1.8
At5g40560.1 68418.m04922 DegP protease, putative contains simila... 29 2.4
At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger) fa... 28 7.4
At5g37250.1 68418.m04475 zinc finger (C3HC4-type RING finger) fa... 28 7.4
At3g10650.1 68416.m01281 expressed protein 27 9.8
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/71 (52%), Positives = 55/71 (77%)
Frame = +1
Query: 55 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 234
+T LA A ++Q+ MLGE L+PL++++ P+ A K+TGMLLE+D +E+LH+LE E+LKAK
Sbjct: 578 ATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAK 637
Query: 235 VDEAVAVCRLI 267
V EA+ V R +
Sbjct: 638 VTEAMDVLRSV 648
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 77.4 bits (182), Expect = 9e-15
Identities = 36/72 (50%), Positives = 56/72 (77%)
Frame = +1
Query: 49 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLK 228
LTS++ +A+P ++ +MLGE+L+PL++R P K+TGMLLE+D +E+LH++E E+LK
Sbjct: 575 LTSSLASASPA-DRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALK 633
Query: 229 AKVDEAVAVCRL 264
+KV EA+ V RL
Sbjct: 634 SKVSEALDVLRL 645
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 74.9 bits (176), Expect = 5e-14
Identities = 36/73 (49%), Positives = 54/73 (73%)
Frame = +1
Query: 49 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLK 228
L S + A P ++Q+ MLGE L+PL++++ + A K+TGMLLE+D +E+LH+LE E+LK
Sbjct: 357 LASNLSNATP-EQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALK 415
Query: 229 AKVDEAVAVCRLI 267
AKV EA+ V R +
Sbjct: 416 AKVAEAMDVLRSV 428
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/71 (49%), Positives = 51/71 (71%)
Frame = +1
Query: 49 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLK 228
L S + A+P + +MLG+ L+PL+++ P A K+TGMLLE+D +E+LH+LE E+LK
Sbjct: 578 LASDLALASP-DKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALK 636
Query: 229 AKVDEAVAVCR 261
AKV EA+ V R
Sbjct: 637 AKVSEALDVLR 647
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/69 (49%), Positives = 50/69 (72%)
Frame = +1
Query: 55 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 234
+T LA A +Q+ +LGE L+PL+ ++ + A K+TGMLLE+D +E+LH+LE E+L AK
Sbjct: 563 ATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAK 622
Query: 235 VDEAVAVCR 261
V EA+ V R
Sbjct: 623 VSEALDVLR 631
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/58 (53%), Positives = 42/58 (72%)
Frame = +1
Query: 88 QKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVCR 261
+ Q+LGE L PL++++ P LA KITGMLLE+D SELL +L+ E L +VDEA V +
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLK 582
>At3g19350.1 68416.m02455 polyadenylate-binding protein-related /
PABP-related similar to poly(A)-binding protein [Cucumis
sativus] GI:7528270; contains Pfam profile PF00658:
Poly-adenylate binding protein, unique domain
Length = 103
Score = 61.7 bits (143), Expect = 5e-10
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 64 LAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDE 243
LA+ P +EQ+ ++GE LF +++ + P A KITGM+LE+D ++LH+L ++ K V E
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
Query: 244 AVAV 255
A+ V
Sbjct: 83 AMEV 86
>At3g28930.1 68416.m03613 avrRpt2-induced AIG2 protein (AIG2)
identical to SP|P54121 AIG2 protein (avrRpt2-induced
gene) {Arabidopsis thaliana}
Length = 170
Score = 31.5 bits (68), Expect = 0.60
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Frame = +1
Query: 10 APQPAVHIQG--QEP-LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLA----GKITGM 168
+P V + G QEP + + +L AP+ Q+ G L+ L R+HP ++ G I G
Sbjct: 7 SPSHDVFVYGSFQEPAVVNLILECAPVMVSAQLHGYHLYRLKGRLHPCISPSDNGLINGK 66
Query: 169 LLE-IDNSEL--LHMLEHAESLKAKVD 240
+L + +S+L L M+E E ++ V+
Sbjct: 67 ILTGLTDSQLESLDMIEGTEYVRKTVE 93
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 141 RVHSLNKWKQSFPKHLFLFLEWCC 70
+ S NK++ SFP+H+FL CC
Sbjct: 58 KFRSTNKFRSSFPQHIFLESPICC 81
>At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family
protein sequencing discrepancy between cDNA and genomic
sequence prevents representation of entire coding
sequence
Length = 578
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 70 AAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAV 249
A PLQ+ Q+L + + P+I + P + +T L I + + +E K K E
Sbjct: 385 ATPLQQVAQVLKQSISPVISTVPPTM---LTATSLSIPSDNASNEMERRPPRKRKFQELP 441
Query: 250 AVCRL 264
A C++
Sbjct: 442 ADCKV 446
>At5g40560.1 68418.m04922 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 410
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 159 YFPSQIRVHSLNKWKQSFPKHLFLFLEWCCCKHSR 55
Y ++V+S+NK K KHL +E CC K R
Sbjct: 325 YMYKHLKVNSVNKVKVENLKHLCELIEKCCTKDLR 359
>At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger)
family protein ow similarity to RING-H2 finger protein
RHA3b [gi:3790575], RHA1a [gi:3790554]; contains Pfam
domain zinc finger, C3HC4 type (RING finger) PF00097
Length = 208
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 59 LCLQQH-HSRNRNRCLGNDCFHLFRE-CTLIWLGK*LVC 169
+CL+ S + N L DCFHLF + C WL + C
Sbjct: 155 ICLEDFSESHDDNIILLPDCFHLFHQSCIFEWLKRQRSC 193
>At5g37250.1 68418.m04475 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA3b [gi:3790575], RHA3a [gi:3790573]; contains Pfam
domain zinc finger, C3HC4 type (RING finger) PF00097
Length = 192
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 59 LCLQQH-HSRNRNRCLGNDCFHLFRE-CTLIWLGK*LVC 169
+CL+ S + N L DCFHLF + C WL + C
Sbjct: 139 ICLEDFSESHDDNIILLPDCFHLFHQNCIFEWLKRQRSC 177
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 12 STTSSAYPRTRTSDLYYACSSTTPGTET 95
ST +++ P + S ++ SS+TPGTET
Sbjct: 912 STAAASAPESSGSLIFGVTSSSTPGTET 939
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,178,304
Number of Sequences: 28952
Number of extensions: 232620
Number of successful extensions: 650
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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