Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00833
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    44   2e-05
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   2.2  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   2.9  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    26   5.1  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.1  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    25   8.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.9  

>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 22/84 (26%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
 Frame = +2

Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLADSSTS- 691
           ++ +L+YPT ++ KSCKL+PV+   + + ++++    Y+   ++  G+++F+   +++S 
Sbjct: 97  SMFHLSYPTVILGKSCKLLPVIALHVFVYKRKFPPHKYLIVTMITAGVSIFSYFQNTSSK 156

Query: 692 ----PNFDLIGVLVISLALLCDAI 751
                +   IG+L++   LL D I
Sbjct: 157 GKHAEHDSPIGLLLLFFNLLMDGI 180


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 321 FLELIFAKPEVKPVSLYITLVQFMITMLLSYGESWIRN 434
           F  +I     + P+ +Y  ++QF   M  SYG S  RN
Sbjct: 450 FRSVIITSGTLSPLDMYPKMLQFNTVMQESYGMSLARN 487


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 602 RKRYSFLDYVAAIVMCV 652
           RKR+SFLDYV  I + V
Sbjct: 26  RKRFSFLDYVVVIFLTV 42


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 106 INRNKYM*CVMEMSSDKMNSVKETFIRIDDENSRSSK 216
           +N+   +  V+E   + MN+  E  I++DD+NS + K
Sbjct: 142 LNKRPVIFSVIEQILEDMNNFCECMIQLDDQNSINIK 178


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 302 LFSLRILLGINICKTGSEASQFVYNLSAIYDYNVIELRRIMDKKSYQKESSTKNVCSFSC 481
           L S+ I  G  IC+  S + +  Y L   Y Y    ++ I  KK    + +T+N     C
Sbjct: 213 LHSIMIQFGF-ICRQKSISKKIAYYL---YSYECFPMKEIDWKKKIVNDGATRNNFFIPC 268

Query: 482 I 484
           I
Sbjct: 269 I 269


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 133 VMEMSSDKMNSVKETFIRIDDENSRSSKTEINILCFDITN 252
           + + + D +   KE  I++  E+ R +KTE N  CFD ++
Sbjct: 211 IPQSTKDLLRIWKEAKIQMH-EDFRCNKTEFNEACFDASS 249


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 655  TDYVYSG*LQHITEFRFDWRSSYI 726
            T Y YS  ++ ++EF+F+W S  I
Sbjct: 1964 TAYYYSIHIRPVSEFKFNWTSEAI 1987


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,454
Number of Sequences: 5004
Number of extensions: 59807
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)