Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00833
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0124 + 971213-971341,971741-971769,971877-972078,972839-97... 93 2e-19
05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82... 63 3e-10
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207... 50 3e-06
05_05_0024 + 21613199-21613208,21613466-21613560,21613656-216137... 33 0.19
01_06_0262 + 27989325-27990443 31 0.75
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 30 2.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 4.0
01_06_1675 + 39078774-39078890,39079607-39079723,39079950-390800... 29 4.0
>03_01_0124 +
971213-971341,971741-971769,971877-972078,972839-973081,
973172-973273,973743-974180
Length = 380
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/83 (48%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Frame = +2
Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIII--MRKRYSFLDYVAAIVMCVGLTMFTLADSST 688
+L++LNYP Q++FKS K++PVMI I +R++Y F +Y++A+++ +GL +FTLAD+ +
Sbjct: 104 SLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEYISAVMLVIGLILFTLADAQS 163
Query: 689 SPNFDLIGVLVISLALLCDAIIG 757
SPNF +IGV ++S AL+ DA +G
Sbjct: 164 SPNFSMIGVAMVSGALVMDAFLG 186
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 267 QFLCCSIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMITMLLSYGESWIRNPIKR 446
QFL CS F YL G E ++ + + Y T VQ + + L + + +K+
Sbjct: 24 QFLICSSGFFFGYLVNGICEEYVYNRLQFS-FGWYFTFVQGFVYLGLIRLQGF---TVKQ 79
Query: 447 KV-PLKTYAVLAALTLGT 497
V P +TY L+A+ +G+
Sbjct: 80 MVNPWRTYVRLSAVLMGS 97
>05_01_0119 +
820566-820739,822708-822737,823153-823266,823341-823433,
823521-823586,824076-824174,824480-824559,825039-825151,
825600-825688,825955-826041,826128-826130,826285-826383
Length = 348
Score = 62.9 bits (146), Expect = 3e-10
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Frame = +2
Query: 347 GSEASQFVYNLSAIY-----DYNVIELRRIMDKKSYQKESSTKNVCSFSCIDIRNNVIFN 511
G+E F Y+L ++ V L KKS + + C S +I
Sbjct: 77 GAEKEFFRYSLFLVFCNRITTSTVSALVLTASKKSLDPVAPLQKYCVVSVSNILTTTCQY 136
Query: 512 LALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLADSS 685
AL Y+++P Q + K K+IPVMI IIMRK+Y DY A+V+ VG ++F L +S
Sbjct: 137 EALKYVSFPVQTLAKCAKMIPVMIWGTIIMRKKYGGKDYFFAVVVTVGCSLFILYPAS 194
>06_03_0629 +
22920206-22920291,22920430-22920527,22920657-22920796,
22921596-22921626,22922025-22922128,22922439-22922560,
22922651-22923050,22923245-22923268
Length = 334
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +2
Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLADSST 688
AL +++YP Q++ KS K+IPVM+ I+ +Y+F +Y+ ++ G++ F L +S+
Sbjct: 99 ALKFISYPAQVLAKSSKMIPVMLMGTILYGVKYTFPEYICTFLVAGGVSSFALLKTSS 156
>05_05_0024 +
21613199-21613208,21613466-21613560,21613656-21613713,
21613843-21614037,21614237-21614316,21614402-21614512
Length = 182
Score = 33.5 bits (73), Expect = 0.19
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Frame = +2
Query: 482 IDIRNNVIFNLALSYLNYPTQLIFKSCKLIP-VMIGSIIIMRKRYSFLDYVAAIVMCVGL 658
ID++ N + A Y +Y T + +C I VMI + + RYS +V A GL
Sbjct: 47 IDVQGNCLAIKAYHY-SYITSVNLLNCWTITWVMILTRFALGTRYSLWQFVGAGTCMTGL 105
Query: 659 TMFTLADSSTSPNFD-----LIGVLVISLALLCDA 748
+ L+DS+ S D L+G +I +A C A
Sbjct: 106 ALVLLSDSNYSDVQDESKRPLLGDALIIVATFCFA 140
>01_06_0262 + 27989325-27990443
Length = 372
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +2
Query: 494 NNVIFNLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTL 673
NN++F+ + SYL T + S +L ++ + II+R +F + A +++ + + L
Sbjct: 102 NNLLFSYSSSYLPVSTSSLLLSTQLAFTLVLAAIIVRHPLNFSNLNAVVLLTLSSVLIAL 161
Query: 674 ADSST 688
S +
Sbjct: 162 RSSDS 166
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 622 QKRITFPHYDNTTNHNWY 569
Q R +FP YDNT N++W+
Sbjct: 431 QHRSSFPSYDNTRNNSWH 448
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 249 KLSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVKP 359
+LSQ+ FL +I + F+LAY + + IF+ P V+P
Sbjct: 309 ELSQIYVFLA-AILIRRFFLAYLTYAQTIFSTPPVQP 344
>01_06_1675 +
39078774-39078890,39079607-39079723,39079950-39080006,
39080340-39080417,39080553-39080597,39080872-39080931,
39081149-39081271,39081850-39081927,39082056-39082125,
39082612-39082719,39082962-39083095,39083177-39083247,
39083384-39083432,39083507-39083557
Length = 385
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/59 (25%), Positives = 34/59 (57%)
Frame = +2
Query: 488 IRNNVIFNLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTM 664
I N + F + L Y N T + + K++ + + +IMR+R+S + + A ++ +G+++
Sbjct: 114 INNYMKFVMQL-YFNPATVKMLGNLKVLVIAVLLKVIMRRRFSTIQWEALALLLIGISV 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,129,414
Number of Sequences: 37544
Number of extensions: 296138
Number of successful extensions: 618
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -