Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00833
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   7e-08
SB_50321| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-32)                 29   5.4  
SB_30774| Best HMM Match : Vpu (HMM E-Value=5.7)                       29   5.4  
SB_11701| Best HMM Match : Dpy-30 (HMM E-Value=0.29)                   28   9.5  

>SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 25/81 (30%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
 Frame = +2

Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLA---DSS 685
           AL ++++PTQ++ K+ K+IPVM+   ++ +K Y + +Y  A+V+ VG+++F L+      
Sbjct: 231 ALKFVSFPTQVLCKASKIIPVMLMGKLVSKKSYPYYEYFIAVVLSVGVSLFLLSTGTQKK 290

Query: 686 TSPNFDLIGVLVISLALLCDA 748
           T+    + G L++   +L D+
Sbjct: 291 TAVETTVSGALILLGYMLFDS 311


>SB_50321| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-32)
          Length = 395

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
 Frame = +3

Query: 264 TQFLCCSIFVF-----IFYLAYG--YFLE----LIFAKPEVKPVSLYI 374
           T+FL C  F+F     + YLA G  Y       L F KP +KP SLY+
Sbjct: 142 TRFLICGTFLFACFAPVPYLASGEKYTFNPGKGLCFQKPNLKPASLYV 189


>SB_30774| Best HMM Match : Vpu (HMM E-Value=5.7)
          Length = 161

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -1

Query: 242 SKHNILISVFDDLLFSSSILMKVSFTEFILSDDI--SITHHIYL 117
           S+H  LI +   ++F+ +I++ ++FT  I+   I  +I HHI++
Sbjct: 57  SQHYYLIDIIIVVIFTINIIITINFTIIIIIIIIIFNINHHIFI 100


>SB_11701| Best HMM Match : Dpy-30 (HMM E-Value=0.29)
          Length = 355

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 130 CVMEMSSDKMNSVK-ETFIRIDDENSRSSKTEINILCFD 243
           C+ ++  ++ N VK ++F+R+DD+ S+  +T+  I  FD
Sbjct: 306 CLQKVKENR-NGVKWDSFLRLDDKQSKLQQTDEKISNFD 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,070,526
Number of Sequences: 59808
Number of extensions: 391930
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)