Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00833
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-10|ABD94100.1| 247|Caenorhabditis elegans Hypothetical p... 107 8e-24
U00067-9|AAK20073.1| 364|Caenorhabditis elegans Hypothetical pr... 107 8e-24
AL132904-16|CAC35849.1| 340|Caenorhabditis elegans Hypothetical... 56 2e-08
AF016441-6|AAX55687.1| 440|Caenorhabditis elegans Paps (adenosi... 45 5e-05
AF016441-5|AAX55688.1| 408|Caenorhabditis elegans Paps (adenosi... 45 5e-05
AF016441-4|AAX55686.1| 425|Caenorhabditis elegans Paps (adenosi... 45 5e-05
Z68215-8|CAA92454.1| 318|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF039051-8|AAB94268.3| 309|Caenorhabditis elegans Serpentine re... 30 1.6
AF003383-2|AAB54235.2| 344|Caenorhabditis elegans Hypothetical ... 30 2.1
AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine re... 29 2.7
U88167-10|AAB42222.1| 804|Caenorhabditis elegans Hypothetical p... 29 4.7
U88167-9|AAK68288.1| 890|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF067219-6|AAC17030.1| 382|Caenorhabditis elegans Innexin prote... 29 4.7
Z73976-1|CAA98289.1| 324|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL032663-6|CAA21766.2| 349|Caenorhabditis elegans Hypothetical ... 28 6.3
AF016446-7|AAC24174.1| 330|Caenorhabditis elegans Serpentine re... 28 8.3
AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans Phosphodieste... 28 8.3
AC024877-3|AAF60898.1| 760|Caenorhabditis elegans Phosphodieste... 28 8.3
>U00067-10|ABD94100.1| 247|Caenorhabditis elegans Hypothetical
protein F54E7.1b protein.
Length = 247
Score = 107 bits (257), Expect = 8e-24
Identities = 49/83 (59%), Positives = 64/83 (77%)
Frame = +2
Query: 509 NLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLADSST 688
N ++ YLNYPTQ+IFK CKLIPV+IG I+I KRY ++D AA++M +G+ MFTLAD+
Sbjct: 5 NASVGYLNYPTQVIFKCCKLIPVLIGGILIQGKRYGWIDIGAAMLMSLGIIMFTLADNKV 64
Query: 689 SPNFDLIGVLVISLALLCDAIIG 757
SPNFD G ++I ALL DA+IG
Sbjct: 65 SPNFDSRGYIMICGALLADAVIG 87
>U00067-9|AAK20073.1| 364|Caenorhabditis elegans Hypothetical
protein F54E7.1a protein.
Length = 364
Score = 107 bits (257), Expect = 8e-24
Identities = 49/83 (59%), Positives = 64/83 (77%)
Frame = +2
Query: 509 NLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLADSST 688
N ++ YLNYPTQ+IFK CKLIPV+IG I+I KRY ++D AA++M +G+ MFTLAD+
Sbjct: 122 NASVGYLNYPTQVIFKCCKLIPVLIGGILIQGKRYGWIDIGAAMLMSLGIIMFTLADNKV 181
Query: 689 SPNFDLIGVLVISLALLCDAIIG 757
SPNFD G ++I ALL DA+IG
Sbjct: 182 SPNFDSRGYIMICGALLADAVIG 204
Score = 70.1 bits (164), Expect = 2e-12
Identities = 34/81 (41%), Positives = 47/81 (58%)
Frame = +3
Query: 267 QFLCCSIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMITMLLSYGESWIRNPIKR 446
QF+ S+ +FI Y+ YGY ELIF P +KP +TL+QF+I Y E I + KR
Sbjct: 41 QFVLLSLAIFILYIGYGYMQELIFKLPGMKPFGWTLTLIQFLIYSGCGYTECIIWHNTKR 100
Query: 447 KVPLKTYAVLAALTLGTMSFS 509
+P + Y V+A T+ TM S
Sbjct: 101 MIPWRIYGVIAFFTVATMGLS 121
>AL132904-16|CAC35849.1| 340|Caenorhabditis elegans Hypothetical
protein Y111B2A.20 protein.
Length = 340
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/83 (36%), Positives = 45/83 (54%)
Frame = +2
Query: 419 IMDKKSYQKESSTKNVCSFSCIDIRNNVIFNLALSYLNYPTQLIFKSCKLIPVMIGSIII 598
++ KK+ TK + + + V N AL YL YPTQ++ KSCK IPVMI ++
Sbjct: 80 LIRKKTEIDNVPTKMYAASAASYLLAMVASNQALQYLPYPTQVLAKSCKPIPVMIFGVLF 139
Query: 599 MRKRYSFLDYVAAIVMCVGLTMF 667
K Y + Y +++ VG+ MF
Sbjct: 140 AHKSYHWRKYCYVLMIVVGVAMF 162
>AF016441-6|AAX55687.1| 440|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform b protein.
Length = 440
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +2
Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLADSS 685
AL Y+++PTQ I K+ K++ M+ ++ +RYS+ +Y + G ++F L+ SS
Sbjct: 215 ALKYVSFPTQTICKASKVVVTMLMGRLVRGQRYSWFEYGCGCTIAFGASLFLLSSSS 271
>AF016441-5|AAX55688.1| 408|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform c protein.
Length = 408
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +2
Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLADSS 685
AL Y+++PTQ I K+ K++ M+ ++ +RYS+ +Y + G ++F L+ SS
Sbjct: 215 ALKYVSFPTQTICKASKVVVTMLMGRLVRGQRYSWFEYGCGCTIAFGASLFLLSSSS 271
>AF016441-4|AAX55686.1| 425|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform a protein.
Length = 425
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +2
Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLADSS 685
AL Y+++PTQ I K+ K++ M+ ++ +RYS+ +Y + G ++F L+ SS
Sbjct: 200 ALKYVSFPTQTICKASKVVVTMLMGRLVRGQRYSWFEYGCGCTIAFGASLFLLSSSS 256
>Z68215-8|CAA92454.1| 318|Caenorhabditis elegans Hypothetical
protein C53B4.6 protein.
Length = 318
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/77 (32%), Positives = 39/77 (50%)
Frame = +2
Query: 446 ESSTKNVCSFSCIDIRNNVIFNLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLD 625
+S K V F +++ NN+ A+ + P +IFKS L+ M II +YS
Sbjct: 63 KSYAKIVAIFFTVNMTNNLALKFAIYF---PLFIIFKSGTLLTNMTMGWIIRNYQYSLKQ 119
Query: 626 YVAAIVMCVGLTMFTLA 676
A +V+ G+ +FTLA
Sbjct: 120 ISAVVVVTAGIVIFTLA 136
>AF039051-8|AAB94268.3| 309|Caenorhabditis elegans Serpentine
receptor, class x protein7 protein.
Length = 309
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 210 IKNRNQYI--ML*HNKLSQLTQFLCCSIFVFIFYL-AYGYFLELIFAKPEVKPVSLYITL 380
I+N N+ + L K Q T++L +F+ IFY+ A+ F L + P KP +
Sbjct: 198 IRNANKKVEDALKSKKRKQDTRYLVQFVFISIFYIAAWSLFYVLPYIVPADKPT--FYAA 255
Query: 381 VQFMITM 401
V F IT+
Sbjct: 256 VPFFITL 262
>AF003383-2|AAB54235.2| 344|Caenorhabditis elegans Hypothetical
protein ZC250.3 protein.
Length = 344
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +2
Query: 437 YQKESSTKNVCSFSCIDIRNNVIFNLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYS 616
++ S T VC + I N ++ +ALS+L T I K+ I + K+ S
Sbjct: 81 FEHRSETLKVCIPALIYTLQNNLYYIALSHLEATTFCISYQMKIFTTAIFMYFFLGKKLS 140
Query: 617 FLDYVAAIVMCVGL 658
+ A +++ +G+
Sbjct: 141 TKQWWALVLLVLGV 154
>AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine
receptor, class x protein6 protein.
Length = 293
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 216 NRNQYIML*HNKLSQLTQFLCCSIFVFIFYLAYGYFLELI-FAKPEVKPVSLYITLVQFM 392
NRN + NK Q ++L +F+ IFY+A +++ + P +P+ + + V F+
Sbjct: 188 NRNVEDSVQSNKRKQEARYLFQFVFISIFYVAVWILFQILPYIVPADQPI--WFSSVPFL 245
Query: 393 ITM 401
+T+
Sbjct: 246 VTL 248
>U88167-10|AAB42222.1| 804|Caenorhabditis elegans Hypothetical
protein D2092.1a protein.
Length = 804
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 213 KNRNQYIML*HNKLSQLTQFLCCSIFVFIFYLAYGYFLELI 335
KN+ +Y++ H+K LT ++ +FV+ F + YF+ L+
Sbjct: 611 KNQMEYLLSWHSKPKSLTAYVIFMLFVYYFQI---YFIPLM 648
>U88167-9|AAK68288.1| 890|Caenorhabditis elegans Hypothetical
protein D2092.1b protein.
Length = 890
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 213 KNRNQYIML*HNKLSQLTQFLCCSIFVFIFYLAYGYFLELI 335
KN+ +Y++ H+K LT ++ +FV+ F + YF+ L+
Sbjct: 697 KNQMEYLLSWHSKPKSLTAYVIFMLFVYYFQI---YFIPLM 734
>AF067219-6|AAC17030.1| 382|Caenorhabditis elegans Innexin protein
15 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -2
Query: 556 LEYQLSWIVQIT*S*IENDIVPNVNAAKTAYVFSGTFLLIGF 431
+E+ ++ + Q T E+D + +N +AYVF+ + L+IG+
Sbjct: 1 MEFVVNLVTQYTVQRHEDDFIDRLNFQYSAYVFALSALVIGY 42
>Z73976-1|CAA98289.1| 324|Caenorhabditis elegans Hypothetical
protein T07C12.1 protein.
Length = 324
Score = 28.3 bits (60), Expect = 6.3
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +3
Query: 219 RNQYIML*HNKLSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMIT 398
RN +I H KL L + +F+F F YG + FA EVK L +
Sbjct: 118 RNAFISA-HFKLYMLGTVM---MFIFFFVYWYGVGIRFAFADEEVKAYIGENFLHDYGEN 173
Query: 399 MLLSYGESWIRNPIKRKVPLKTYAVLAALT-LGTMSFSI 512
+ S + N K+ +++ L A+T + T+S S+
Sbjct: 174 CTTTNLVSLLYNEASHKIVSRSWFTLCAVTVISTLSISL 212
>AL032663-6|CAA21766.2| 349|Caenorhabditis elegans Hypothetical
protein Y75B12B.7 protein.
Length = 349
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 249 KLSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVKPVSLYITL-VQFMITMLLSYGESW 425
K L F CS F+ F + F+ +FA ++ P+ L TL + M+ + + W
Sbjct: 252 KTEGLILFTLCSFFISTFPIIIANFMLPLFANLQIIPLILIRTLTISTMLQTINAATHGW 311
Query: 426 I 428
+
Sbjct: 312 V 312
>AF016446-7|AAC24174.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein21 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 157 FYLMTFPLHITYICFCLCISRQIWFKYSCCLMA 59
FY++TF + C +CIS +F+Y L++
Sbjct: 94 FYILTFSIE----CSAVCISEMFYFRYKASLVS 122
>AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans
Phosphodiesterase protein 6, isoformb protein.
Length = 697
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 239 KHNILISVFDDLLFSSSILMKVSFTEFILSDDISITHHIYLFLF 108
+HN +++F L I M+ + E +L+ DIS H YL F
Sbjct: 585 QHNANVNIFSSLSREEFIQMRHAMVEMVLATDIS-RHFEYLAKF 627
>AC024877-3|AAF60898.1| 760|Caenorhabditis elegans
Phosphodiesterase protein 6, isoforma protein.
Length = 760
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 239 KHNILISVFDDLLFSSSILMKVSFTEFILSDDISITHHIYLFLF 108
+HN +++F L I M+ + E +L+ DIS H YL F
Sbjct: 585 QHNANVNIFSSLSREEFIQMRHAMVEMVLATDIS-RHFEYLAKF 627
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,600,284
Number of Sequences: 27780
Number of extensions: 321622
Number of successful extensions: 863
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -