Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00833
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12600.1 68414.m01463 hypothetical protein 94 1e-19
At4g23010.1 68417.m03319 UDP-galactose transporter-related conta... 89 2e-18
At5g59740.1 68418.m07488 UDP-galactose/UDP-glucose transporter-r... 55 4e-08
At3g46180.1 68416.m04997 UDP-galactose/UDP-glucose transporter-r... 54 8e-08
At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter c... 52 5e-07
At1g14360.1 68414.m01702 UDP-galactose/UDP-glucose transporter, ... 50 1e-06
At1g77210.1 68414.m08993 sugar transporter, putative similar to ... 33 0.21
At3g59360.2 68416.m06620 nucleotide-sugar transporter family pro... 32 0.48
At3g59360.1 68416.m06619 nucleotide-sugar transporter family pro... 32 0.48
At5g37110.1 68418.m04454 hypothetical protein 29 3.4
At2g05080.1 68415.m00530 hypothetical protein low similarity to ... 28 5.9
At1g50460.1 68414.m05656 hexokinase, putative similar to hexokin... 28 5.9
At5g57100.1 68418.m07129 transporter-related low similarity to G... 28 7.7
At5g56390.1 68418.m07039 F-box family protein contains F-box dom... 28 7.7
At5g50630.1 68418.m06272 nodulin family protein similar to nodul... 28 7.7
At5g50520.1 68418.m06257 nodulin family protein similar to nodul... 28 7.7
>At1g12600.1 68414.m01463 hypothetical protein
Length = 349
Score = 93.9 bits (223), Expect = 1e-19
Identities = 41/83 (49%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Frame = +2
Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIII--MRKRYSFLDYVAAIVMCVGLTMFTLADSST 688
+L+YLNYP Q++FKS K++PVM+ I +R++Y +Y++A+++ +GL +FTLAD+ T
Sbjct: 105 SLAYLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPVHEYISAMLLVIGLILFTLADAHT 164
Query: 689 SPNFDLIGVLVISLALLCDAIIG 757
SPNF +IGV++IS AL+ DA +G
Sbjct: 165 SPNFSIIGVMMISGALIMDAFLG 187
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +3
Query: 267 QFLCCSIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMITMLLSYGESWIRNPIKR 446
QFL CS F YL G E ++ + + Y T Q ++ + L Y + +
Sbjct: 25 QFLICSSGFFFGYLVNGICEEYVYNRLKFS-YGWYFTFAQGLVYIALIYMYGFRTKQMVN 83
Query: 447 KVPLKTYAVLAALTLGT 497
P KTY L+ + +G+
Sbjct: 84 --PWKTYVKLSGVLMGS 98
>At4g23010.1 68417.m03319 UDP-galactose transporter-related contains
weak similarity to UDP-galactose transporter related
isozyme 1 (GI:1669562) [Mus musculus]
Length = 345
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/83 (46%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Frame = +2
Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIII--MRKRYSFLDYVAAIVMCVGLTMFTLADSST 688
+L+YLNYP Q++FKS K++PVMI I +R++Y +Y++A ++ +GL +FTLAD+
Sbjct: 102 SLAYLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPVHEYISAFLLVLGLILFTLADAQM 161
Query: 689 SPNFDLIGVLVISLALLCDAIIG 757
SPNF +IG+++I+ AL+ DA +G
Sbjct: 162 SPNFSMIGIMMITGALIMDAFLG 184
>At5g59740.1 68418.m07488 UDP-galactose/UDP-glucose
transporter-related weak similarity to
UDP-galactose/UDP-glucose transporter [Arabidopsis
thaliana] GI:22651763
Length = 344
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +2
Query: 419 IMDKKSYQKESSTKNVCSFSCIDIRNNVIFNLALSYLNYPTQLIFKSCKLIPVMIGSIII 598
+ KK + C S +I AL Y+++P Q + K K+IPVM+ +I
Sbjct: 75 LASKKVLDPVAPVYKYCLISVTNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWGTLI 134
Query: 599 MRKRYSFLDYVAAIVMCVGLTMFTL--ADSSTSP 694
M+K+Y DY+ A ++ +G ++F L A SP
Sbjct: 135 MQKKYKGFDYLVAFLVTLGCSVFILFPAGDDVSP 168
>At3g46180.1 68416.m04997 UDP-galactose/UDP-glucose
transporter-related contains weak similarity to
UDP-galactose/UDP-glucose transporter (GI:22651763)
[Arabidopsis thaliana]
Length = 347
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +2
Query: 419 IMDKKSYQKESSTKNVCSFSCIDIRNNVIFNLALSYLNYPTQLIFKSCKLIPVMIGSIII 598
+ KK + C S +I AL Y+++P Q + K K+IPVM+ +I
Sbjct: 76 LASKKVLDPVAPVYKYCLISVTNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWGTLI 135
Query: 599 MRKRYSFLDYVAAIVMCVGLTMFTL 673
M+K+Y DY+ A ++ +G ++F L
Sbjct: 136 MQKKYRGFDYLVAFLVTLGCSVFIL 160
>At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter
contains transmembrane domains; identical to
UDP-galactose/UDP-glucose transporter (GI:22651763)
[Arabidopsis thaliana] similar to UGTrel1 (GI:1669564)
[Rattus rattus]; identical to cDNA
UDP-galactose/UDP-glucose transporter GI:22651762
Length = 332
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/58 (36%), Positives = 39/58 (67%)
Frame = +2
Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLADSST 688
AL Y++YP Q++ KS K+IPVM+ ++ RY+F +Y+ ++ G+++F L +S+
Sbjct: 102 ALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTFPEYMCTFLVAGGVSIFALLKTSS 159
>At1g14360.1 68414.m01702 UDP-galactose/UDP-glucose transporter,
putative very similar to UDP-galactose/UDP-glucose
transporter (GI:22651763) {Arabidopsis thaliana}
Length = 331
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/58 (36%), Positives = 38/58 (65%)
Frame = +2
Query: 515 ALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLADSST 688
AL Y++YP Q++ KS K+IPVM+ ++ RY+ +Y+ ++ G++MF L +S+
Sbjct: 102 ALKYISYPAQVLAKSSKMIPVMLMGSLVYGIRYTLPEYLCTFLVAGGVSMFALLKTSS 159
>At1g77210.1 68414.m08993 sugar transporter, putative similar to
monosaccharide transporter PaMst-1 [Picea abies]
GI:2258137, sugar carrier protein GI:169735 from
[Ricinus communis], glucose transporter [Saccharum
hybrid cultivar H65-7052] GI:347855; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 504
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 246 NKLSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMITMLLSYGESW 425
+K + L S+ +F + + G L L F + + P SL + LV + +L+YG SW
Sbjct: 346 DKFGRRFLLLEASVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSW 405
>At3g59360.2 68416.m06620 nucleotide-sugar transporter family
protein low similarity to SP|P78382 CMP-sialic acid
transporter {Homo sapiens}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 405
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/88 (22%), Positives = 45/88 (51%)
Frame = +2
Query: 488 IRNNVIFNLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMF 667
I N + F + L Y N T + + K++ + + ++M++R+S + + A ++ +G+++
Sbjct: 131 INNYLKFTMQL-YFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALALLLIGISVN 189
Query: 668 TLADSSTSPNFDLIGVLVISLALLCDAI 751
L S IG+ + + A +C I
Sbjct: 190 QL--RSLPEGATAIGIPLATGAYVCTVI 215
>At3g59360.1 68416.m06619 nucleotide-sugar transporter family
protein low similarity to SP|P78382 CMP-sialic acid
transporter {Homo sapiens}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 405
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/88 (22%), Positives = 45/88 (51%)
Frame = +2
Query: 488 IRNNVIFNLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMF 667
I N + F + L Y N T + + K++ + + ++M++R+S + + A ++ +G+++
Sbjct: 131 INNYLKFTMQL-YFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALALLLIGISVN 189
Query: 668 TLADSSTSPNFDLIGVLVISLALLCDAI 751
L S IG+ + + A +C I
Sbjct: 190 QL--RSLPEGATAIGIPLATGAYVCTVI 215
>At5g37110.1 68418.m04454 hypothetical protein
Length = 1307
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 106 INRNKYM*CVMEMSSDKMNSVKETFIRIDDENSRSSK 216
+N N++ C M++ SD+ N VKE + I DE S+
Sbjct: 962 LNPNEFTTCNMKVGSDRANLVKEASLIIWDEAPMMSR 998
>At2g05080.1 68415.m00530 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 1238
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 106 INRNKYM*CVMEMSSDKMNSVKETFIRIDDENSRSSK 216
+N N++ C M+ SD+ N VKE + I DE S+
Sbjct: 929 LNPNEFTTCNMKAGSDRANLVKEASLIIWDEAPMMSR 965
>At1g50460.1 68414.m05656 hexokinase, putative similar to hexokinase
1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
Length = 498
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 589 YYHNEETLF--VFGLCSGNCYVCRTDYV 666
YYH+ +T+ VFG S CY+ RTD +
Sbjct: 238 YYHDPDTVVAVVFGTGSNACYLERTDAI 265
>At5g57100.1 68418.m07129 transporter-related low similarity to
GDP-fucose transporter [Caenorhabditis elegans]
GI:13940504, phosphoenolpyruvate/phosphate translocator
precursor [Mesembryanthemum crystallinum] GI:9295275
Length = 390
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 509 NLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRKRYSFLDYVAAIVMCVGLTMFTLAD 679
N++L Y + + K ++ + RKR SF+ V+ V+ VG+ + T+ D
Sbjct: 147 NVSLKYNSVGFYQMAKIAVTPSIVFAEFLWYRKRVSFMKVVSLTVVSVGVAVATVTD 203
>At5g56390.1 68418.m07039 F-box family protein contains F-box domain
Pfam:PF00646
Length = 428
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 166 VKETFIRIDDENSRSSKTEINIL 234
V++ I+IDD +SRSSKT+ IL
Sbjct: 101 VRKLIIKIDDTSSRSSKTDQVIL 123
>At5g50630.1 68418.m06272 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 540
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 282 SIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMITM-LLSYGESW 425
SI F+ +A GYF ELI K + P +L +++VQ ++++ L+ Y W
Sbjct: 367 SISNFLGRVAGGYFSELIIRKLSL-PRTLAMSVVQAIMSLGLIYYAIDW 414
>At5g50520.1 68418.m06257 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 540
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 282 SIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMITM-LLSYGESW 425
SI F+ +A GYF ELI K + P +L +++VQ ++++ L+ Y W
Sbjct: 367 SISNFLGRVAGGYFSELIIRKLSL-PRTLAMSVVQAIMSLGLIYYAIDW 414
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,243,423
Number of Sequences: 28952
Number of extensions: 280352
Number of successful extensions: 681
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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