Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00832
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 199 3e-52
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 119 4e-28
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 100 2e-22
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 90 4e-19
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 83 4e-17
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 74 2e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 72 8e-14
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 72 1e-13
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 71 2e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 69 7e-13
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 65 1e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 64 2e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 58 1e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 58 1e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 58 2e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 57 2e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 57 2e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 55 9e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 54 2e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 52 7e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 51 2e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 40 5e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.011
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.099
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.099
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.92
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 0.92
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.2
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 3.7
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.9
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 199 bits (486), Expect = 3e-52
Identities = 95/163 (58%), Positives = 115/163 (70%), Gaps = 1/163 (0%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + VK
Sbjct: 79 LIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVK 138
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVAYQ-TGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
+G++ PTPIQ Q WP+AMSG+++V TGSGKTL+Y LPAIVHIN QP + GDGPI
Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIV 198
Query: 613 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RD
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRD 241
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 119 bits (287), Expect = 4e-28
Identities = 58/163 (35%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
+ F K+FY + SP EV+E R + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
++GY++PT IQAQ P SG++++ +TGSGKT+A++LP HI +Q P++ G+GPIA
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIA 494
Query: 613 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
+++ PTRELA QI + F +R C +GGAP ++Q D
Sbjct: 495 IIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIAD 537
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 100 bits (240), Expect = 2e-22
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Frame = +1
Query: 334 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 514 Y-QTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 681
+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 682 SYVRNTCVFGGAPKREQA 735
R V GG EQ+
Sbjct: 352 LGFRCVSVVGGHAFEEQS 369
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 89.8 bits (213), Expect = 4e-19
Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 495
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 496 GKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 672
G+++V +TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q +
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSL 259
Query: 673 GHTSYVRNTCVFGGAPKREQAR 738
+ ++ V+GGAPK EQAR
Sbjct: 260 IQGTNLKAVVVYGGAPKSEQAR 281
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 83.0 bits (196), Expect = 4e-17
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 14/144 (9%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTG 525
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A QTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 526 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVAA 666
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 667 DFGHTSYVRNTCVFGGAPKREQAR 738
F + S+VR V+GGA R Q R
Sbjct: 277 KFCYRSWVRPCAVYGGADIRAQIR 300
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 73.7 bits (173), Expect = 2e-14
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVH 567
F+E D + + + +G+K PTPIQ + P+ ++ ++++ QTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 568 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 735
+ NN P A+VLAPTRELA QI + G + VR+ + GG QA
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQA 158
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 72.1 bits (169), Expect = 8e-14
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Frame = +1
Query: 361 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKT 537
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LVA +TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 538 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 660
AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 71.7 bits (168), Expect = 1e-13
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVH 567
F+ + + + G+K PTPIQ + P+ + G+++V +TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 732
+ + AL+L+P RELA Q +V DF + +R+ + GG EQ
Sbjct: 131 LKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQ 182
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 70.5 bits (165), Expect = 2e-13
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYQ-TGSGKTLAYILPAIVH 567
F+ N +++ V G+K+ TP+QA P+ + K+LV TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 669
+ + G G AL++APTRELA QI V +
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 68.9 bits (161), Expect = 7e-13
Identities = 47/142 (33%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 498
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 499 KNLV-AYQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 669
++++ A +TGSGKTLA+++P I ++ P R G G I +++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKE 183
Query: 670 FGHTSYVRNTCVFGGAPKREQA 735
+ V GGA +R +A
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEA 205
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 64.9 bits (151), Expect = 1e-11
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-AYQTGSGKTLAYILPAIVH 567
F+ N + +G+ +G++ PT IQ + P+A+ GK++V A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
+ +P ++ L+L PTRELA Q VA + + GG + Q ++
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQE 376
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 64.1 bits (149), Expect = 2e-11
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVH 567
FE+ + G+ G++ P+PIQ + PIA+SG++++A + G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 729
++ + + L+L PTRELA Q QV G V+ GG R+
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRD 154
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 58.4 bits (135), Expect = 1e-09
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 505 LVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-H 678
++A Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115
Query: 679 TSYVRNTCVFG 711
+ + C+ G
Sbjct: 116 MNVQCHACIGG 126
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 58.0 bits (134), Expect = 1e-09
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Frame = +1
Query: 382 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVAY-QTGSGKTLAYIL 552
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++ Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 553 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 693
+ ++ P P A+ LAP+RELA+QI V + G + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 57.6 bits (133), Expect = 2e-09
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 505 LV-AYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 681
++ A +TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRL 137
Query: 682 SYVRNTCVFGGAPKREQ 732
+ GG +E+
Sbjct: 138 HSFSAGLIIGGNNYKEE 154
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 57.2 bits (132), Expect = 2e-09
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Frame = +1
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVAY---QTGSGKTLAYILPAIVHINNQPP--IRRGDG 603
M PT IQ+ P ++ + A+ QTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 604 PIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKR-EQAR 738
A+++APTREL QQI VA + + ++ + V GG K+ E+AR
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKAR 265
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 57.2 bits (132), Expect = 2e-09
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVH 567
F + ++ +K + EPT IQ + G+N + +TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
+ P G AL+L PTRELA QI + A G +++ + GG Q+ D
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSID 121
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 55.2 bits (127), Expect = 9e-09
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +1
Query: 382 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKNLVAYQTGSGKTLAYILPA 558
I F++ N + +G+ G++ P+ IQ + PI L Q+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 559 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 729
+ I+ +++ AL+LAPTRELAQQIQ+V G V GG R+
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRD 129
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 54.4 bits (125), Expect = 2e-08
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 462
P P++ ++ +++ K + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 463 IQAQGWPIAMSGKNLVAYQ-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 639
IQ P S ++L+A TGSGKT+AY+ P + + P G A+++APTREL
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTREL 127
Query: 640 AQQIQQVA 663
+QI + A
Sbjct: 128 CEQIYRQA 135
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 52.4 bits (120), Expect = 7e-08
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +1
Query: 442 GYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 612
G+ +P PIQ+ P A G +++ TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 613 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 738
LV+APTRELA QI Q + +R + GG ++Q R
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQR 237
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Frame = +1
Query: 358 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN--LVAYQTGSG 531
S ++ P + E A+ + + G+++ TP+Q + + +V +TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 532 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 711
KTLA++L A + P +++L+PTRELA QI + A + + +R + G
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG 148
Query: 712 GAPKREQ 732
G K +
Sbjct: 149 GNSKMRE 155
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.5 bits (88), Expect = 5e-04
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Frame = +1
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 600
+ + G++ P+ +Q P ++ G +++ ++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 601 GPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGG 714
G ++ LVL TRELA QI+ A F + VR +GG
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGG 157
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.011
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 496 GKNLVAYQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 651
G V+ TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 174 GDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.099
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.099
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 0.92
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGW-PIAMSGKNLVAYQTGSGKTLAYILPAIVHI 570
++ GY +P P+QA G+ P+ + L + TG + ++P + +
Sbjct: 1057 IQPTGYMQPIPVQATGYQPLMVQPTGLQPHMTGVMPQVTGVMPQMTGV 1104
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.7 bits (61), Expect = 0.92
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 490 MSGKNL-VAYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 645
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 244 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 71
P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 70 HDYFSDLVEDVYLNYGFFLTQG 5
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 26.6 bits (56), Expect = 3.7
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYQTGS 528
V V VE PI Y GV +GY + P G P+ ++GK +
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 529 GKTLAYILPAIVHINNQPPIRRGD 600
GK +L + + + P ++RGD
Sbjct: 309 GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 453 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 328
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 313 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 444
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 313 PYEVEEYRNKHEVTVS 360
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 442 PLSLHLVAHNQENL--LLQSIE 383
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,220
Number of Sequences: 5004
Number of extensions: 67943
Number of successful extensions: 237
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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