Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00832
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 3e-36
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 124 8e-29
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 108 4e-24
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 98 6e-21
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 8e-18
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 4e-17
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 72 4e-13
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 67 2e-11
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 59 3e-09
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 59 3e-09
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 58 6e-09
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 56 3e-08
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 56 4e-08
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 55 5e-08
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 54 2e-07
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 54 2e-07
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 52 7e-07
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 49 3e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 5e-06
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 47 2e-05
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 42 7e-04
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 36 0.026
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 34 0.14
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 32 0.43
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.7
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 4.0
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 29 5.3
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 149 bits (360), Expect = 3e-36
Identities = 70/161 (43%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+PFNKNFY+ HP + K+S E+++ R K + VSG P F F + + ++
Sbjct: 475 KPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRK 534
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 615
+ Y +PT IQ Q PIA+SG++++ +TGSGKT A++ PA+VHI +QP ++ GDGPI L
Sbjct: 535 LEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVL 594
Query: 616 VLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 738
+ APTREL QQI A FG + VFGG K EQ++
Sbjct: 595 ICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSK 635
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 124 bits (299), Expect = 8e-29
Identities = 67/145 (46%), Positives = 87/145 (60%)
Frame = +1
Query: 307 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 486
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ---- 112
Query: 487 AMSGKNLVAYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 666
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA
Sbjct: 113 -------------------FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAY 153
Query: 667 DFGHTSYVRNTCVFGGAPKREQARD 741
G +R+TC++GGAPK Q R+
Sbjct: 154 SVGKHCKLRSTCIYGGAPKGPQIRE 178
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 108 bits (260), Expect = 4e-24
Identities = 55/136 (40%), Positives = 81/136 (59%), Gaps = 5/136 (3%)
Frame = +1
Query: 331 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 511 AY-QTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVAADFG 675
+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFG 202
Query: 676 HTSYVRNTCVFGGAPK 723
+R V GGA +
Sbjct: 203 RPLGIRTVSVIGGADR 218
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 98.3 bits (234), Expect = 6e-21
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Frame = +1
Query: 265 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 444
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 445 YKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 621
++ PTPIQ Q MSG++++ +TGSGKTLAY LP + + + P GD P+AL+L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALIL 151
Query: 622 APTRELAQQI 651
PTREL QQ+
Sbjct: 152 TPTRELMQQV 161
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 87.8 bits (208), Expect = 8e-18
Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 505 LVA-YQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVAAD 669
++A QTGSGKT A++LP + + N P A+ +APTRELA QI A
Sbjct: 751 VMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARK 810
Query: 670 FGHTSYVRNTCVFGGAPKREQAR 738
F H + +R +GG Q R
Sbjct: 811 FAHGTMLRPVVCYGGVSVSHQLR 833
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 85.4 bits (202), Expect = 4e-17
Identities = 49/128 (38%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 355 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSG 531
VSG I F E F + + + GY+ PTP+Q PI M+G++L+A QTGSG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 532 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 711
KT AY+LP + + Q P+AL +APTRELA+QI A F + ++ +G
Sbjct: 529 KTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPIKVCVCYG 588
Query: 712 GAPKREQA 735
G QA
Sbjct: 589 GVSVPYQA 596
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 72.1 bits (169), Expect = 4e-13
Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Frame = +1
Query: 382 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-AYQTGSGKTLAYILPA 558
++ F + G+ G+ PT IQ QG P+A+SG++++ A +TGSGKTLA+++P
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 559 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAP-KREQA 735
I + Q DG ALV++PTRELA Q +V G+ + + GG K EQ
Sbjct: 109 IETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQK 167
Query: 736 R 738
R
Sbjct: 168 R 168
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 66.9 bits (156), Expect = 2e-11
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 459
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 460 PIQAQGWPIAMSGKN-LVAYQTGSGKTL 540
PIQ Q P+ +SG++ +V TGSGK L
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
QPF K+FY P + K +P E +E+R E + V G P++ + + + +K
Sbjct: 62 QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVA 513
Y++PTPIQAQ P+ MSG++++A
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIA 147
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/67 (37%), Positives = 33/67 (49%)
Frame = +1
Query: 532 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 711
K +Y P + P I G IA+V+ PTRELA QI + F + +R CV+G
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYG 180
Query: 712 GAPKREQ 732
G EQ
Sbjct: 181 GTGISEQ 187
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVH 567
FE+ + G+ G+ +P+PIQ + P+A++G++++A + G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 675
+ + ALVL PTRELA Q Q+ + G
Sbjct: 109 TDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVH 567
FE+ + G+ G+ +P+PIQ + P+A++G++++A + G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 675
+ + ALVL PTRELA Q Q+ + G
Sbjct: 109 TDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 58.4 bits (135), Expect = 6e-09
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = +1
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV-AYQTGSGKTLAYILPAIVHINNQPPIRRGD 600
QG+K MG+ T IQ + + G++L+ A +TGSGKTLA+++P +V + + + +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRN 643
Query: 601 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 735
G ++++PTREL+ Q VA D + GG ++ +A
Sbjct: 644 GTGVIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEA 688
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 58.4 bits (135), Expect = 6e-09
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Frame = +1
Query: 340 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--N 504
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++ N
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVN 144
Query: 505 LVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-H 678
++A Q+G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H
Sbjct: 145 MIAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKH 199
Query: 679 TSYVR-NTCVFGGA-PKREQARD 741
+++ N V G P+ ++ D
Sbjct: 200 CPHIKINYAVRGNQFPRGQKCTD 222
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +1
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVHINNQPPIRRGD 600
+ V +G+ PTPIQA P+A+ GK++ A TG+GKT A++LP + + +P +
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSP 80
Query: 601 GPIALVLAPTRELAQQ 648
LV+ PTRELA Q
Sbjct: 81 AIRVLVITPTRELAIQ 96
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 55.6 bits (128), Expect = 4e-08
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +1
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 615
MG K+PT IQ P + G++ + +TGSGKT A+ LP + + + P G A+
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPY-----GIFAV 79
Query: 616 VLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 735
VL PTRELA QI G ++ + GG +QA
Sbjct: 80 VLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQA 119
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 55.2 bits (127), Expect = 5e-08
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Frame = +1
Query: 460 PIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTR 633
PIQA + G++++ +TG+GKTL++ LP + + + + +RG P LV+APTR
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTR 157
Query: 634 ELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 732
ELA+Q+ + S + C++GG P Q
Sbjct: 158 ELAKQVGNEFENL--KSNLEVYCIYGGMPYEPQ 188
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 55.2 bits (127), Expect = 5e-08
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Frame = +1
Query: 433 KTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPI 609
+T G+++P+ IQ + + G++++A Q+G+GKT + + + I+ Q +R P
Sbjct: 13 ETEGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQ 67
Query: 610 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 738
ALVL+PTRELA QIQ+V G V+ GG E R
Sbjct: 68 ALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIR 110
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 53.6 bits (123), Expect = 2e-07
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Frame = +1
Query: 412 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-AYQTGSGKTLAYILPAIVHINNQPPI 588
D V + + + +PT IQ P + +++ A QTGSGKTLAY+ P +VH +
Sbjct: 387 DDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAP-LVHRLREDEE 445
Query: 589 RRG-----DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
R G P A ++ P RELA QI + A H + R+ + GG K++ RD
Sbjct: 446 RHGILARLKRPRACIVVPARELATQILKTAKSLCHHARFRSVGLIGGR-KQKWMRD 500
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 505 LVA-YQTGSGKT 537
++A QTGSGKT
Sbjct: 174 VMACAQTGSGKT 185
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 481 PIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 657
P+ M GK++VA +TGSGKT A+++P + G AL+L+PTRELA Q Q+
Sbjct: 313 PLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQK 369
Query: 658 VAADFGHTSYVRNTCVFGG 714
+ G + ++++ + GG
Sbjct: 370 FIKELGRFTGLKSSVILGG 388
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 53.2 bits (122), Expect = 2e-07
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 18/126 (14%)
Frame = +1
Query: 409 PDYVQQGVKTMGYKEPTPIQAQGWPIAMS-GKNLV-AYQTGSGKTLAYILPAIVHIN--- 573
PD + + + G+ +PTPIQ+ P A+ ++++ A +TGSGKTLA+ +P I HI
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYK 197
Query: 574 ----NQPPI-------RRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG-- 714
Q P +G +AL++APTRELA Q++ + V+ + GG
Sbjct: 198 KRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMA 257
Query: 715 APKREQ 732
APK+++
Sbjct: 258 APKQQR 263
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 382 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPA 558
I FE+ + + + V GYK+PTP+Q PI ++L+A QTGSGKT A+++P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 559 IVHINNQPP 585
+ I + P
Sbjct: 934 LSRIYMEGP 942
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 52.4 bits (120), Expect = 4e-07
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 490 MSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVA 663
+S ++++A Q+G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V
Sbjct: 120 LSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVV 179
Query: 664 ADFGHTSYVRNTCVFGGAPKRE 729
G +V+ GG RE
Sbjct: 180 LALGDYMHVKCHACIGGTNVRE 201
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 51.6 bits (118), Expect = 7e-07
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = +1
Query: 409 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL-VAYQTGSGKTLAYILPAIVHINNQPP 585
P V++ +K MG +P PIQ + P S K+L + +TG+GK+L ++LP++ Q P
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP 222
Query: 586 IRRGDGPIALVLAPTRELA-QQIQQVAADFGHTSYV 690
RG G I ++ PTRELA Q + +V+ G S V
Sbjct: 223 -GRGYGTI--IVVPTRELASQMLYEVSRLLGDKSIV 255
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Frame = +1
Query: 346 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYQT- 522
EV + G P + F +Y + +G PT +Q WP + G+++
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 523 GSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAAD-FGHTSYV 690
GSGK LAY+LP I I + +GP+ L+L + ++ V D +
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCEDLIRNRRRT 293
Query: 691 RNTCVFGGAPKREQ 732
R +FGG + ++
Sbjct: 294 RVQMIFGGGAEEDR 307
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 486
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 487 AMSG 498
G
Sbjct: 197 MAHG 200
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 600
+G+ G+++P+PIQ + P+ G +L+A ++G+GKT + + A+ ++ I +
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENV-----ITESN 80
Query: 601 GPIALVLAPTRELAQQIQQVAADFG 675
++L PTRE+A Q++ V G
Sbjct: 81 CIQIIILTPTREIAVQVKDVICAIG 105
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/73 (36%), Positives = 36/73 (49%)
Frame = +1
Query: 517 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 696
+TGSGKT A+ LP + + + P AL+L PTRELA QI + G V+
Sbjct: 9 ETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALGSGIGVKC 63
Query: 697 TCVFGGAPKREQA 735
+ GG QA
Sbjct: 64 AVIVGGIDMMSQA 76
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +1
Query: 604 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 738
P ALVL+PTRELA QIQ+V G V+ GG E R
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIR 48
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 33.9 bits (74), Expect = 0.14
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +1
Query: 271 KNFYDPHPTVLKRSPYEVEEY-RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGY 447
K D + LK E +E+ +N TV+ + P+ E P V + + +G+
Sbjct: 467 KELPDENDENLKEFAPEDDEFLKNLSLDTVAQMAAGIPV----ETETPPEVYKALGQLGF 522
Query: 448 KEPTPIQAQGWPIAMSG-KNLVAYQTGSGKTLAYILPAIVHINNQP 582
Q Q +SG +LV TG+GK+L Y LPA ++ P
Sbjct: 523 SSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPAYMYHKRSP 568
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 32.3 bits (70), Expect = 0.43
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 442 GYKEPTPIQAQGWPIAMSGKN-LVAYQTGSGKTLAYILPAIV 564
GY + P+Q Q ++ K+ L+ TG+GKT+ Y +PA++
Sbjct: 136 GYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPALL 177
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 367 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 480
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 313 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 444
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 197 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 87
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 325 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 417
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 433 KTMGYKEPTPI--QAQGWPIAMSGKNLVAYQTGS 528
K +GYK P GWP+ SGK V Y TG+
Sbjct: 1668 KDLGYKGPVCAIPSCPGWPVDCSGKKYV-YDTGT 1700
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +1
Query: 403 NFPDYVQQGVKTMGY---KEPTPIQAQGWPIAMSGKNLVAYQTGSGKTLAYILPAIVHIN 573
NF DYV + Y KE IQ WPI G ++ Q + P+ HI
Sbjct: 421 NFMDYVSYAKECSPYGKNKESRRIQGCPWPIHQKGTAVLVDQELLNGVEKEVAPSTPHIV 480
Query: 574 NQPP 585
PP
Sbjct: 481 AVPP 484
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 262 VGVNRIPIWASHVLPSREF 206
VGV I WAS++LPSR+F
Sbjct: 10 VGVRDIEQWASNLLPSRQF 28
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 508 VAYQTGSGKTLAYILPAIV 564
V+ TGSGK+L Y LPA+V
Sbjct: 39 VSMPTGSGKSLCYQLPAVV 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,123,739
Number of Sequences: 59808
Number of extensions: 510371
Number of successful extensions: 1357
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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