Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00832
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 204 6e-53
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 189 1e-48
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 189 1e-48
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 144 4e-35
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 144 4e-35
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 144 4e-35
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 142 2e-34
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 133 1e-31
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 133 1e-31
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 130 7e-31
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 102 2e-22
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 102 3e-22
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 100 2e-21
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 95 6e-20
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 93 1e-19
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 90 1e-18
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 87 1e-17
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 84 8e-17
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 84 8e-17
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 83 2e-16
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 81 1e-15
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 77 2e-14
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 74 9e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 71 6e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 71 1e-12
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 69 3e-12
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 66 2e-11
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 65 4e-11
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 64 9e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 63 2e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 62 5e-10
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 61 7e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 61 7e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 61 9e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 61 9e-10
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 59 4e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 58 5e-09
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 58 5e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 58 5e-09
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 58 5e-09
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 58 6e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 58 8e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 57 1e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 57 1e-08
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 56 2e-08
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 56 2e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 55 4e-08
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 54 8e-08
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 54 1e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 52 3e-07
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 51 9e-07
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 50 1e-06
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 50 2e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 50 2e-06
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 50 2e-06
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 49 3e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 46 2e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 46 3e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 44 1e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 42 4e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 42 6e-04
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 38 0.005
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 38 0.005
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 30 1.4
At2g25460.1 68415.m03049 expressed protein 30 1.4
At5g40390.1 68418.m04899 raffinose synthase family protein simil... 29 2.5
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 29 4.3
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 4.3
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 4.3
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 28 5.7
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.7
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 5.7
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 5.7
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 5.7
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.7
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.7
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 9.9
At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger) fa... 27 9.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 204 bits (497), Expect = 6e-53
Identities = 92/163 (56%), Positives = 117/163 (71%), Gaps = 1/163 (0%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
G+ EPTPIQ+QGWP+AM G++L+ +TGSGKTL+Y+LPAIVH+N QP + GDGPI
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIV 175
Query: 613 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
LVLAPTRELA QIQQ A+ FG +S ++ TC++GG PK Q RD
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRD 218
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 189 bits (461), Expect = 1e-48
Identities = 86/170 (50%), Positives = 121/170 (71%), Gaps = 1/170 (0%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIR 591
+ + + +G+ EPTPIQAQGWP+A+ G++L+ +TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 592 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
+ DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RD
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRD 284
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 189 bits (461), Expect = 1e-48
Identities = 86/170 (50%), Positives = 121/170 (71%), Gaps = 1/170 (0%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIR 591
+ + + +G+ EPTPIQAQGWP+A+ G++L+ +TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 592 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
+ DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RD
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRD 284
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 144 bits (350), Expect = 4e-35
Identities = 73/153 (47%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 642
QAQ WPIAM G+++VA +TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 643 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
QIQ+ A FG +S + TC++GGAPK Q RD
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 144 bits (350), Expect = 4e-35
Identities = 73/153 (47%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 642
QAQ WPIAM G+++VA +TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 643 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
QIQ+ A FG +S + TC++GGAPK Q RD
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 144 bits (350), Expect = 4e-35
Identities = 73/153 (47%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 642
QAQ WPIAM G+++VA +TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 643 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
QIQ+ A FG +S + TC++GGAPK Q RD
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 142 bits (345), Expect = 2e-34
Identities = 65/162 (40%), Positives = 101/162 (62%), Gaps = 1/162 (0%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 615
Y++PT IQ Q PI +SG++++ +TGSGKT A++LP IVHI +QP ++R +GPI +
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGV 305
Query: 616 VLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
+ APTRELA QI A F +R + V+GG K EQ ++
Sbjct: 306 ICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKE 347
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 133 bits (322), Expect = 1e-31
Identities = 71/163 (43%), Positives = 100/163 (61%), Gaps = 5/163 (3%)
Frame = +1
Query: 268 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
+ G+ PTPIQAQ WPIA+ +++VA +TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 613 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
L+LAPTRELA QIQ A FG +S + TC++GGAPK Q ++
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKE 553
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 133 bits (322), Expect = 1e-31
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + EV YR + E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 615
+ Y++P PIQ Q PI MSG++ + +TGSGKTL ++LP + HI +QPP+ GDGPI L
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGL 606
Query: 616 VLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 732
V+APTREL QQI F +R V+GG+ +Q
Sbjct: 607 VMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQ 645
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 130 bits (315), Expect = 7e-31
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + V YR + E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 615
+ Y++P PIQAQ PI MSG++ + +TGSGKTL ++LP + HI +QPP+ GDGPI L
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGL 473
Query: 616 VLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 732
V+APTREL QQI F + V+GG+ +Q
Sbjct: 474 VMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQ 512
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 102 bits (245), Expect = 2e-22
Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 10/173 (5%)
Frame = +1
Query: 244 GFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 423
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYQ-TGSGKTLAYILPAIVHINNQP---PIR 591
+ +K G PTPIQ QG P+ +SG++++ TGSGKTL ++LP I+ + PI
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIA 169
Query: 592 RGDGPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQ 732
G+GPIALV+ P+RELA+Q ++Q A Y +R+ GG R Q
Sbjct: 170 AGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQ 222
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 102 bits (244), Expect = 3e-22
Identities = 51/105 (48%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGP 606
V + G+ P+PIQAQ WPIAM +++VA +TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GP 302
Query: 607 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
LVL+PTRELA QIQ A FG +S + C++GGAPK Q ++
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKE 347
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 99.5 bits (237), Expect = 2e-21
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Frame = +1
Query: 331 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 511 AY-QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGH 678
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 679 TSYVRNTCVFGGAPKREQ 732
R T + GG EQ
Sbjct: 415 YLGFRVTSIVGGQSIEEQ 432
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 94.7 bits (225), Expect = 6e-20
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 7/145 (4%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 492
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 493 SGKNLVAY-QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQ 657
G++L+ +TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 658 VAADFGHTSYVRNTCVFGGAPKREQ 732
V + G +++ CV+GG+ K Q
Sbjct: 210 VLREAGEPCGLKSICVYGGSSKGPQ 234
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 93.5 bits (222), Expect = 1e-19
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 459
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 460 PIQAQGWPIAMSGKNLVAYQ-TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAP 627
PIQ QG P+ ++G++++ TGSGKTL ++LP I+ + PI G+GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 628 TRELAQQIQQVAADF 672
+RELA+Q +V F
Sbjct: 231 SRELARQTYEVVEQF 245
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 90.2 bits (214), Expect = 1e-18
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 432
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 433 KTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDG-- 603
+ Y +PTP+Q PI + G++L+A QTGSGKT A+ P I I ++R G
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSR 234
Query: 604 ---PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
P+A++L+PTRELA QI A F + + V+ +GG P +Q R+
Sbjct: 235 TVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRE 283
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 87.0 bits (206), Expect = 1e-17
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 7/167 (4%)
Frame = +1
Query: 262 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDG---- 603
Y +PTP+Q PI +G++L+A QTGSGKT A+ P I I I R G
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGV 223
Query: 604 -PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 741
P+A++L+PTRELA QI A F + + V+ +GG P +Q R+
Sbjct: 224 YPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRE 270
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 84.2 bits (199), Expect = 8e-17
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTG 525
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 526 SGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYV 690
SGKT A+ P I I + R G P A++L+PTRELA QI A F + + V
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 691 RNTCVFGGAPKREQARD 741
+ +GG P +Q R+
Sbjct: 259 KVVVAYGGTPIHQQLRE 275
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 84.2 bits (199), Expect = 8e-17
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTG 525
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 526 SGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYV 690
SGKT A+ P I I + R G P A++L+PTRELA QI A F + + V
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 691 RNTCVFGGAPKREQARD 741
+ +GG P +Q R+
Sbjct: 259 KVVVAYGGTPIHQQLRE 275
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 82.6 bits (195), Expect = 2e-16
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
Frame = +1
Query: 310 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 484 IAMSGKNLVA-YQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTRELAQQI 651
A++GK+L+A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 652 QQVAADFGHTSYVRNTCVFGGAPKREQ 732
+ A G + V GG P Q
Sbjct: 203 EDQAKMLGKGLPFKTALVVGGDPMSGQ 229
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 80.6 bits (190), Expect = 1e-15
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Frame = +1
Query: 352 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYQ-TGS 528
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 529 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 708
GKT A+ LP + + +P +R L+L PTRELA QI + + + ++ +
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIV 273
Query: 709 GGAPKREQ 732
GG REQ
Sbjct: 274 GGLSVREQ 281
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 76.6 bits (180), Expect = 2e-14
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVH 567
FE N V +K GYK PTPIQ + P+ +SG ++VA +TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 732
+ P +G G AL+L+PTR+LA+Q + + G + +R + + GG +Q
Sbjct: 90 LKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQ 141
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 74.1 bits (174), Expect = 9e-14
Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = +1
Query: 439 MGYKEPTPIQAQGWPIAMSGKN-LVAYQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 612
MG++ PT +QAQ P+ +SG++ LV TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 613 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPK-REQAR 738
LV+ PTREL Q+ + H ++ V GG K +E+AR
Sbjct: 108 LVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKAR 151
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 71.3 bits (167), Expect = 6e-13
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Frame = +1
Query: 334 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 501
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 502 NLVA-YQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 648
A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 70.5 bits (165), Expect = 1e-12
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Frame = +1
Query: 382 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-AYQTGSGKTLAYILPA 558
++ F+E + V ++ + + PT IQ G P M K++V TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP- 169
Query: 559 IVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 723
IV + + G P +VL PTREL++Q+ +VA H + R+ V GG+
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRI 229
Query: 724 REQ 732
R Q
Sbjct: 230 RPQ 232
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 68.9 bits (161), Expect = 3e-12
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 498
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 499 KNLVAY-QTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 651
K++VA +TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 66.5 bits (155), Expect = 2e-11
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Frame = +1
Query: 310 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 489
S E ++ K ++ V VEV NP + +++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 490 MSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQI 651
+ G +LV +TG GKTLA++LP + + N P + G P LVL PTRELA+Q+
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
Query: 652 QQVAADFGHTSYVRNTCVFGG 714
+G + + + C++GG
Sbjct: 191 AADFDAYGGSLGLSSCCLYGG 211
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 65.3 bits (152), Expect = 4e-11
Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV-AYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 615
MG+ T IQA+ P M G++++ A +TGSGKTLA+++PA V + + +G L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVL 230
Query: 616 VLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQA 735
V+ PTRELA Q VA + H+ V V GG ++ +A
Sbjct: 231 VICPTRELAIQSYGVAKELLKYHSQTVGK--VIGGEKRKTEA 270
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 64.1 bits (149), Expect = 9e-11
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Frame = +1
Query: 367 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLA 543
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++ QTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 544 YILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFGHTSYVRNTC 702
+ +P + + +++P R P A VL+PTRELA QI + G +R
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAV 122
Query: 703 VFGGAPKREQ 732
+ GG + +Q
Sbjct: 123 LVGGIDRMQQ 132
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVH 567
FE ++ + K +G ++PTP+Q P ++G++++ QTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 714
+ P G ALV+ PTRELA Q+ + G +R + + GG
Sbjct: 119 RLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGG 163
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 61.7 bits (143), Expect = 5e-10
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Frame = +1
Query: 418 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHI-NNQPPIR 591
+ + + + G ++ PIQ AM G++++ +TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 592 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQAR 738
RG P+ LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMR 221
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 61.3 bits (142), Expect = 7e-10
Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Frame = +1
Query: 418 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINN-QPPIR 591
+ + +K G ++ PIQ AM G++++ +TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 592 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARD 741
RG P LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRE 234
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 61.3 bits (142), Expect = 7e-10
Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Frame = +1
Query: 322 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 501
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 502 NLV-AYQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 675
+++ A +TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELL 185
Query: 676 HTSYVRNTCVFGGAPKREQAR 738
+ V GG +R +A+
Sbjct: 186 KHHSQTVSMVIGGNNRRSEAQ 206
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 9e-10
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVH 567
FE+ + G+ G++ P+PIQ + PIA++G++++A + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 729
I+ + + A+++ PTRELA Q QV + G ++ GG ++
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKD 241
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 9e-10
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVH 567
FE+ + G+ G++ P+PIQ + PIA++G++++A + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 729
I+ + + A+++ PTRELA Q QV + G ++ GG ++
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKD 241
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 58.8 bits (136), Expect = 4e-09
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Frame = +1
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 600
+ +K G++ T +Q PI + GK+++A +TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 601 GP---IALVLAPTRELAQQ 648
I LV+ PTRELA Q
Sbjct: 455 RQPPIIVLVVCPTRELASQ 473
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVH 567
F++ +G++ G+K T +Q P+ + GK+++A +TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 568 INNQPPIRRGDGP---IALVLAPTRELAQQ 648
+ PP R + I LV+ PTRELA Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 58.4 bits (135), Expect = 5e-09
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVH 567
FE+ + +G+ G+++P+PIQ + PIA++G +++A + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 729
I+ + + A++L PTRELA Q QV + ++ GG R+
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRD 234
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 58.4 bits (135), Expect = 5e-09
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVH 567
FE+ + +G+ G+++P+PIQ + PIA++G +++A + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 729
I+ + + A++L PTRELA Q QV + ++ GG R+
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRD 234
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 58.4 bits (135), Expect = 5e-09
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVH 567
FE+ + +G+ G+++P+PIQ + PIA++G +++A + G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 568 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 729
I+ + + + A++L PTRELA Q QV + + GG R+
Sbjct: 216 IDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRD 264
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 58.0 bits (134), Expect = 6e-09
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Frame = +1
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 600
+ +K GY+ T +Q PI + GK+++A +TG+GKT+A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 601 --GPI-ALVLAPTRELAQQ 648
PI ALV+ PTRELA Q
Sbjct: 127 KRPPILALVICPTRELANQ 145
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 57.6 bits (133), Expect = 8e-09
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Frame = +1
Query: 403 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQ 579
+ P +++ ++ G PIQ A+ G++++A +TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 580 P----PIRR-GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 714
RR G P LVLAPTRELA+Q+++ + Y+ CV+GG
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGG 215
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Frame = +1
Query: 472 QGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTREL 639
Q P A++GK+L+A TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 640 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 732
Q++ A G + V GG P Q
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQ 92
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 57.2 bits (132), Expect = 1e-08
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Frame = +1
Query: 442 GYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 609
G++ TP+QA+ P S K++V TGSGKTLA++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 610 ALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGG 714
++++PTREL+ QI +VA F T V + + GG
Sbjct: 93 GVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGG 128
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +1
Query: 382 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-AYQTGSGKTLAYILPA 558
++ F + D ++G+K Y + T +Q+ P A+ G++++ A +TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 559 IVHINNQPPIRRGDGPIALVLAPTRELAQQ 648
+ ++ + DG ++++PTRELA Q
Sbjct: 130 LEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 56.4 bits (130), Expect = 2e-08
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Frame = +1
Query: 379 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKT--LAYI 549
PI+ F++ D V +GV GYK+P+ IQ + + G++++A Q+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 550 LPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFG 711
+ IV+I+++ LVL+P+RELA Q ++ G HT+ + C+ G
Sbjct: 80 VCQIVNISSRK-------VQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGG 127
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 55.2 bits (127), Expect = 4e-08
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVAYQTGSGKTLAYILPAIVH 567
F E + + + +K + P IQA + + GK+ ++A Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 568 INN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKREQ 732
+ Q + G P +VL PT ELA Q+ + R+ V GG +R Q
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQ 495
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 54.4 bits (125), Expect = 8e-08
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Frame = +1
Query: 442 GYKEPTPIQAQGWPIAMSGKNLVA-YQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 609
G++ TP+QA+ P S K++V TGSGKTLA++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 610 ALVLAPTRELAQQIQQVA 663
++++PTREL+ QI +VA
Sbjct: 94 GVIISPTRELSAQIHKVA 111
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 409 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPP 585
P+++ ++ +G+ PT IQ + P +G++ + + QTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ-- 141
Query: 586 IRRGDGPIALVLAPTRELAQQIQQVA 663
A+++ PTREL Q+ +VA
Sbjct: 142 ---RSSVQAVIVVPTRELGMQVTKVA 164
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYQ-TGSGKTLAYILPAIVH 567
FEE PD + ++ G+ PT +Q+ P + G + V TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 568 INNQPPIRRGDGP--------IALVLAPTRELAQQI 651
I R A+++AP+REL QI
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 50.8 bits (116), Expect = 9e-07
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Frame = +1
Query: 367 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLA 543
EVH + F+ + + +G+ G+++P+ IQ +G G +++ Q+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 544 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 723
+ + ++ + ALVLAPTRELAQQI++V G V+ GG
Sbjct: 93 FCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSV 147
Query: 724 REQAR 738
RE R
Sbjct: 148 REDQR 152
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 50.4 bits (115), Expect = 1e-06
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS 495
E E N VT SG + FE+ N + +G+ M +++P+ IQA P+ M+
Sbjct: 70 EEPEDSNIKAVT-SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMT 128
Query: 496 G--KNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 666
K+L+A GSGKT ++L + ++ P +R P AL + PTRELA Q +V
Sbjct: 129 PPHKHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQ 183
Query: 667 DFG 675
G
Sbjct: 184 KMG 186
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 50.0 bits (114), Expect = 2e-06
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Frame = +1
Query: 352 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGS 528
T G+E PI F + + V +GV G+++P+ IQ + + G++++A Q+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 529 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 705
GKT L ++ + AL+L+PTRELA Q ++ G H + + C+
Sbjct: 84 GKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
Query: 706 FGGA 717
G +
Sbjct: 139 GGNS 142
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Frame = +1
Query: 457 TPIQAQGWPIAMSGKNL-VAYQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLA 624
TP+QA P+ S K++ V TGSGKTLA+++P + + PP + + ++++
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIIS 97
Query: 625 PTRELAQQIQQVAADFGHT-SYVRNTCVFGG 714
PTREL+ QI VA F T + V + + GG
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGG 128
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 49.6 bits (113), Expect = 2e-06
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504
E + E S +VH + F+ + + +G+ G+++P+ IQ +G G +
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 505 LVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 681
++ Q+G+GKT + + ++ + ALVLAPTRELAQQI++V G
Sbjct: 79 VIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ-----ALVLAPTRELAQQIEKVMRALGDY 133
Query: 682 SYVRNTCVFGGAPKREQAR 738
V+ GG RE R
Sbjct: 134 LGVKVHACVGGTSVREDQR 152
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 49.2 bits (112), Expect = 3e-06
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Frame = +1
Query: 409 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPP 585
PD ++ G+ G+++P+ IQ +G G +++ Q+G+GKT + + ++
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLV 108
Query: 586 IRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 738
+ ALVLAPTRELAQQI++V G V+ GG RE R
Sbjct: 109 QCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQR 154
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVAYQTGSGKTLAYILPAIVH 567
F+E+ + + G + T +Q + GK+ LV +TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 568 I----NNQPPIRRGDGPIALVLAPTRELAQQI 651
+ N+ + + AL+L PTRELA QI
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 46.0 bits (104), Expect = 3e-05
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Frame = +1
Query: 253 LLQPFNKNFYDPH---PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPI---QYFEEANFPD 414
L + N+N D P + R ++ + ++ V E H+ I + F+E+
Sbjct: 325 LTKRVNRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISP 384
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVAYQTGSGKTLAYILPAIVHI----NNQ 579
+ + G + T +Q + GK+ LV +TG+GK++A++LPAI + N+
Sbjct: 385 LTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSG 444
Query: 580 PPIRRGDGPIALVLAPTRELAQQI 651
+ + L+L PTRELA QI
Sbjct: 445 KGVHKVAPIFVLILCPTRELASQI 468
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 44.0 bits (99), Expect = 1e-04
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Frame = +1
Query: 418 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLV-AYQTGSGKTLAYILPAIVHI------- 570
+ + + + +KEPT IQ + +A GK+++ A +TGSGKTLA+ LP + +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 571 -------NNQPPIRRGDGPI-ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 726
+ DG + AL++ PTRELA Q+ + + V+ + GG
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSE 320
Query: 727 EQAR 738
+Q R
Sbjct: 321 KQER 324
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 41.9 bits (94), Expect = 4e-04
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +1
Query: 418 VQQGVKTMGYKEPTPIQAQGW-----PIAMSGKNLVAYQTGSGKTLAYILPAIVHINNQP 582
+++ ++ MG P+Q W P V TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 583 PIRRGDGPIALVLAPTRELAQQIQQV 660
P+R ALV+ PTR+LA Q++ V
Sbjct: 91 PVR---CLRALVVLPTRDLALQVKDV 113
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 41.5 bits (93), Expect = 6e-04
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Frame = +1
Query: 412 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVAYQTGSGKTLAYILPAIVHINN---- 576
D V ++ G+ P+ QA P +SGK+ +VA +TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALD 148
Query: 577 QPPIRRGDGP-----IALVLAPTRELAQQI 651
R + P I+L+L P L +Q+
Sbjct: 149 SEVTNREERPFPLKNISLILCPNVMLCEQV 178
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +1
Query: 442 GYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 615
G++ P+ +Q + P A+ G +++ ++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 616 VLAPTRELAQQI 651
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +1
Query: 442 GYKEPTPIQAQGWPIAMSGKNLVAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 615
G++ P+ +Q + P A+ G +++ ++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 616 VLAPTRELAQQI 651
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +1
Query: 340 KHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVAY 516
K V +S + P Y E D + G K P+Q Q +M K+ V
Sbjct: 170 KPSVQISNKDHETP-SYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLM 228
Query: 517 QTGSGKTLAYILPA 558
TG GK+L Y LPA
Sbjct: 229 PTGGGKSLCYQLPA 242
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 200 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 84
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At5g40390.1 68418.m04899 raffinose synthase family protein similar
to galactinol-raffinose galactosyltransferase [Vigna
angularis] GI:6634701, seed imbibition protein
GB:AAA32975 GI:167100 from [Hordeum vulgare]; contains
Pfam profile PF05691: Raffinose synthase or seed
imbibition protein Sip1
Length = 783
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 429 CKDNGLQRTDAHSSSRLADSYVWKEFSGVPNGFRQNVGLHLASHCAH 569
C D T+A S R+ D + + SG PNG G H+ HCA+
Sbjct: 459 CNDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMV-HCAY 504
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 507 SGVPNGFRQNVGLHLASHCAHK*PTAYSER*WSDCFGLGAYQRVSTTNSAS 659
+G+ +GF++ G+HL+ H H P A E +++ F + + + T + S
Sbjct: 63 AGIASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 517 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 651
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 8 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 433 KTMGYKEPTPIQAQGWPIAMSGKNL-VAYQTGSGKTLAYILPAIV 564
K G P Q + MSG ++ V TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Frame = +1
Query: 367 EVHNPIQYFEEANFP--DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYQTGSGKTL 540
E + P Y A +P Y Q G GY P QG+P G Y G
Sbjct: 504 EGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQGYP--AQGYPPPQYPQGHPPQY 561
Query: 541 AYILPAIVHINNQPPIRRGD 600
Y P H PP + D
Sbjct: 562 PYQGPPPPHYGQAPPKNKKD 581
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 650 ICCANSLVGAKTKAIGPSPLRI 585
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 456
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 457 TPIQAQGWPIAMSGKNLVAY 516
+P++ + P+ S ++ V+Y
Sbjct: 232 SPVRDEYAPVIFS-QDSVSY 250
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 456
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 457 TPIQAQGWPIAMSGKNLVAY 516
+P++ + P+ S ++ V+Y
Sbjct: 255 SPVRDEYAPVIFS-QDSVSY 273
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 456
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 457 TPIQAQGWPIAMSGKNLVAY 516
+P++ + P+ S ++ V+Y
Sbjct: 232 SPVRDEYAPVIFS-QDSVSY 250
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 271 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 426
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 271 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 426
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 81 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 227
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 155
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -1
Query: 275 FLLKGWSKQNPNLGV----ACSALQRILFSHQSLQILQIYCHRC 156
FLL+ SK NPNL V S L I+ L + +++ +RC
Sbjct: 33 FLLRLTSKSNPNLPVDDVSIASGLANIIVLADQLSLNRLFSYRC 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,049,104
Number of Sequences: 28952
Number of extensions: 351438
Number of successful extensions: 1158
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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