Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00831
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    27   2.2  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   8.9  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   8.9  

>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 60  SFLLESLL*NIKRCKKMRNRNPGAKVGASPARPVRRAVPIVSRQ 191
           SF+L+    N+KR  K    +    VG    +  ++ +PI+SRQ
Sbjct: 378 SFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQ 421


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 544 GCVEWRVGWVL 576
           GC  WRVGW++
Sbjct: 252 GCTGWRVGWLI 262


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 617 RARCSLYF*LYDYSLK*YYTIRTHYDYYNIN 709
           R   SLY+ L D+SL       THYD   +N
Sbjct: 17  RVPTSLYYSLSDFSLSAISIFPTHYDQPYLN 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,292
Number of Sequences: 5004
Number of extensions: 36381
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)