Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00831
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46954| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_21356| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_57415| Best HMM Match : AlkA_N (HMM E-Value=0.56)                   28   9.5  

>SB_46954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
 Frame = +1

Query: 511 CEWRVGN-----VS*CGCVEWRVGWVLTN 582
           CEWRV N     V   GC +WR  W +TN
Sbjct: 100 CEWRVANGVANGVLRMGCRKWRCEWRVTN 128


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 592 RGEHS*APNRRATRHNRIN*HYLLATHRTHSTNYSH*T 479
           R  H   P   AT   R + + LL  + TH+T YSH T
Sbjct: 317 RYAHYTLPTLHATHTTRYSHYTLLTLYATHTTRYSHYT 354



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 565 RRATRHNRIN*HYLLATHRTHSTNYSH*T 479
           + AT   R + + LL  H TH+T YSH T
Sbjct: 374 QHATHTTRYSHYTLLTLHATHTTRYSHNT 402



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 559 ATRHNRIN*HYLLATHRTHSTNYSH*T 479
           AT   R + + LL  H TH+T YSH T
Sbjct: 360 ATHATRYSHYTLLTQHATHTTRYSHYT 386


>SB_21356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1003

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 256 SSAQRESM*RYDRISKKNHKI 318
           SS QRESM RY R +K +HK+
Sbjct: 911 SSLQRESMIRYRRQAKGSHKV 931


>SB_57415| Best HMM Match : AlkA_N (HMM E-Value=0.56)
          Length = 214

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 517 WRVGNVS*CG-CVEWRVGWVL-TNAHRASPRLTAP 615
           W V ++   G C++W +GW+  + AH+A    T+P
Sbjct: 20  WHVSHIRDVGLCLQWFMGWISGSKAHQARVSDTSP 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,155,597
Number of Sequences: 59808
Number of extensions: 273535
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)