Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00831
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   4.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   4.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   9.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   9.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   9.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 179 RKSAELFTIYFLIMNVFY 232
           R S  +F ++FL +NVFY
Sbjct: 425 RASRIVFPLFFLAINVFY 442


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 251 QPPRLRESRCNVTIEF 298
           QPP + +S C++ +EF
Sbjct: 144 QPPAVYKSSCSIDVEF 159


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 202 DIFSYYERFLLDRGAHTASSAQRE 273
           D + YY+ + L+RG  T S   RE
Sbjct: 26  DPYLYYDFYPLERGELTNSGKMRE 49


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 202 DIFSYYERFLLDRGAHTASSAQRE 273
           D + YY+ + L+RG  T S   RE
Sbjct: 41  DPYLYYDFYPLERGELTNSGKMRE 64


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 259 SAQRESM*RYDRISKKNHKI*KKLYNDY 342
           +++  S  R +R   K HKI   L N+Y
Sbjct: 62  TSKERSRDRKEREKSKEHKIISSLSNNY 89


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 259 SAQRESM*RYDRISKKNHKI*KKLYNDY 342
           +++  S  R +R   K HKI   L N+Y
Sbjct: 62  TSKERSRDRKEREKSKEHKIISSLSNNY 89


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 259 SAQRESM*RYDRISKKNHKI*KKLYNDY 342
           +++  S  R +R   K HKI   L N+Y
Sbjct: 62  TSKERSRDRKEREKSKEHKIISSLSNNY 89


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 291 IVTLHRLSLSRGG 253
           +V+LHRLS+  GG
Sbjct: 27  LVSLHRLSIYSGG 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,375
Number of Sequences: 438
Number of extensions: 3004
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)