Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00830
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.12 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    26   0.28 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   2.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   2.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   6.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 321 NAPCATATSHLCKGQA*WRRRALLVEGLGSS-ASGGSTPALENDDEAGGNSSSEEKSGLG 145
           ++PCAT ++ L  G            GL ++ ASG S   L N+  + G SSS   S +G
Sbjct: 35  HSPCATGSNGLPAGAG--SNLLCASNGLVTTLASGSSLNGLTNNVPSNGLSSSGPFSSIG 92

Query: 144 G 142
           G
Sbjct: 93  G 93


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
 Frame = -2

Query: 324 PNAPCATATSHLCK-GQA*WRRRALLVEGLGSSASGGSTPALENDDEAGGNSSSEEKSGL 148
           P      A  HL K G    R+          +  GG+    E+ D AG  +S     GL
Sbjct: 340 PQKLTTAAGKHLRKVGDPSKRKGTYAFRTPDENGEGGAWVGYEDPDTAGNKASYARAKGL 399

Query: 147 GGPSI 133
           GG +I
Sbjct: 400 GGIAI 404


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 225 SGGSTPALENDDEAGGNSSSEEKSGLGGPSI 133
           +GG     E+ D AG  +S  +  GLGG +I
Sbjct: 382 NGGFWVGYEDTDTAGYKASYVKAKGLGGIAI 412


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 234 SSASGGSTPALENDDEAGGNSSSEEK 157
           S + GGS  +LE+DD        ++K
Sbjct: 217 SKSGGGSAGSLEDDDNISDPEDDDDK 242


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 508 FVQSLHSI-PGYISTNTATICILIV 579
           F +S  S+ P YI T +   CI+I+
Sbjct: 55  FNESSSSVFPNYIRTTSMVFCIIIM 79


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 508 FVQSLHSI-PGYISTNTATICILIV 579
           F +S  S+ P YI T +   CI+I+
Sbjct: 55  FNESSSSVFPNYIRTTSMVFCIIIM 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,021
Number of Sequences: 336
Number of extensions: 3119
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)