Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00830
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   2.9  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.8  
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    26   6.6  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   6.6  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   6.6  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 270 WRRRALLVEGLGSSASGGSTPALENDDEAGGNSSSE 163
           W +  + V+ +GSS S  S+   E+ ++A G +  E
Sbjct: 24  WSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDE 59


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 144 LLSRTSPLMNCFRQLRHHFPALESTRRLPKNRAPLRAELAASIRPVL 284
           +LSRTS + NC  Q   +   LE    L KN  P+    AAS +  L
Sbjct: 270 VLSRTSNVFNCRAQCLEYVEVLE----LSKNLVPIFENTAASDKEAL 312


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +1

Query: 214 RPAACRRTEPLYEQSSPPPSG 276
           +P+ C+RT+P++ + + P +G
Sbjct: 13  KPSRCKRTKPIFREPNSPVNG 33


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 243 GLGSSASGGSTPALENDDEAGGNSSSEEKSGLG 145
           G  ++A+GG   A E  +EA     S+E  G G
Sbjct: 75  GAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFG 107


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 227 AEEPSPSTSRARRLHQACPLQRWLVAVAHGAFGQLSQLHRHCRRL 361
           ++E +PS SR +    +     W++       G+ S L+  CR L
Sbjct: 405 SDEFNPSVSRKKAKLTSSQFSNWMLVTGVTGIGKTSCLYAICREL 449


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 165 LMNCFRQLRHHFPA-LESTRRLPKNRAPLRAELAASIRPVLCKD 293
           +++C  +  H++    + T  L KNR   R +L  SI P  C+D
Sbjct: 471 VLDCLPEEGHNWKVPADKTHPLWKNRKDFRDKLICSIDPPGCQD 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,572
Number of Sequences: 5004
Number of extensions: 49533
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)