Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00830
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0294 + 14010150-14010491,14010593-14010775 31 0.98
07_03_0944 + 22787933-22789906 29 3.0
08_01_1010 - 10215625-10216335,10216372-10216473 29 3.9
04_04_0951 + 29614196-29615275 29 3.9
03_05_0267 - 22538631-22539452 29 3.9
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 29 3.9
12_02_1153 + 26524232-26524474,26524563-26524694 29 5.2
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 29 5.2
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 29 5.2
07_01_1217 - 11624586-11624936,11625311-11625424,11625495-116255... 28 6.9
06_03_0433 - 20718726-20719895 28 6.9
05_07_0013 + 27044145-27044339,27044461-27045558 28 9.1
04_04_0316 - 24338774-24339367 28 9.1
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 28 9.1
01_05_0319 - 20871781-20871909,20872001-20872053,20873271-20873598 28 9.1
>04_03_0294 + 14010150-14010491,14010593-14010775
Length = 174
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 243 GLGSSASGGSTPALENDDEAGGNSSSEEKSGL 148
G GS A G+ ND+ GGNS+S GL
Sbjct: 21 GAGSGAGAGAPGGAVNDNNNGGNSASPSSGGL 52
>07_03_0944 + 22787933-22789906
Length = 657
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -2
Query: 267 RRRALLVEGLGSSASGGSTPALENDDEAGGNSSSEEKSGL 148
RRRAL V S ASG S+P L + + G S S S L
Sbjct: 167 RRRALAVAT--SVASGSSSPPLSSSPDEGNRSPSSRSSSL 204
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 229 RRTEPLYEQSSPPPSGLSFAKMAGSSGTWRVR 324
R P Y S+PPPS + +G+S WR R
Sbjct: 201 RAASPEYSPSTPPPSPVPSDAESGTSPLWRRR 232
>04_04_0951 + 29614196-29615275
Length = 359
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 220 AACRRTEPLYEQSSPPPSGLSFAKMAGSSGTW 315
AA + +P EQS PPP G + A+ AG++ W
Sbjct: 256 AAVKEDKPAAEQSPPPP-GEAVAEAAGATRGW 286
>03_05_0267 - 22538631-22539452
Length = 273
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = -2
Query: 270 WRRRALLVEGLGSSASGGSTPALENDDEAGGNSSSEEKSGLGGPS 136
W R V+GLG S GG GG SS E SG GG S
Sbjct: 106 WARATAAVDGLGDSGGGGLGDG-GGGGLGGGGSSGGEGSG-GGSS 148
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = +3
Query: 147 LSRTSPLMNCFRQLR--HHFPALESTRRLPKNRAPL----RAELAASIRP 278
L+RT PL + R HH P+L + RLP R PL R ++AS P
Sbjct: 18 LTRTIPLRLRLHRRRFLHHLPSLAALPRLPLPRPPLLPHARRHVSASAAP 67
>12_02_1153 + 26524232-26524474,26524563-26524694
Length = 124
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = -2
Query: 282 GQA*WRRRALLVEGLGSSASGGS------TPALENDDEAGGNSSSEEKSGLG 145
G+ W RR L G+S SGGS ++DD+ GG +++ G+G
Sbjct: 36 GRGRWERRRL-AWAAGASGSGGSRDDDNDVSGGDDDDDGGGGDCNDDAVGIG 86
>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/41 (21%), Positives = 23/41 (56%)
Frame = +2
Query: 293 WLVAVAHGAFGQLSQLHRHCRRLTRKARAHVRSTLATQSRQ 415
W+ + HG + +S + ++C + +++ ++ AT S+Q
Sbjct: 1731 WVYTLVHGRYSNISAVVKYCDEMKSRSKRGAPTSTATASQQ 1771
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 114 SAHTAARSKDLLSRTSPLMNCF--RQLRHHFPALESTRRLPKNR 239
S A R+ S PL NC+ + R P L S RRLP NR
Sbjct: 10 SPSRAGRANLFSSPPPPLPNCYDPKHRRPAPPPLPSARRLPSNR 53
>07_01_1217 -
11624586-11624936,11625311-11625424,11625495-11625576,
11626762-11626845,11627430-11627639,11627756-11628099,
11628215-11628331
Length = 433
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 237 GSSASGGSTPALENDDEAGGNSSSEEKSGLGGP 139
GSSA GG D+A G S + + +GGP
Sbjct: 179 GSSAGGGGRGRGRGSDDARGGSRAAAAAAVGGP 211
>06_03_0433 - 20718726-20719895
Length = 389
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -2
Query: 246 EGLGSSASGGSTPALENDDEAGGNSSSEEKS 154
EG GSSA G +T A ND++ N S EKS
Sbjct: 90 EGHGSSADG-NTEANSNDEDGTTNHSEGEKS 119
>05_07_0013 + 27044145-27044339,27044461-27045558
Length = 430
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 267 RRRALLVEGLGSSASGGSTPALENDDEAG 181
R+ A V+G GSS+SG A +DD +G
Sbjct: 105 RKTAAAVQGAGSSSSGQKRKAAMDDDGSG 133
>04_04_0316 - 24338774-24339367
Length = 197
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 217 PAACRRTEPLYEQSSPPPSGLSFAKMAGSSGTWRVRP 327
P R +PL E+ +PPP S + + SS R+ P
Sbjct: 102 PWRARPQQPLPEEQNPPPQETSASSSSSSSTHVRIAP 138
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 196 IFQRWSRPAACRRTEPLYEQSSPPPSGLSFAKMAGSSGTWRVRPTVS 336
I + SRP + + + P SS P S S GS G R RP V+
Sbjct: 307 IDHKTSRPTSSQSSRPGSAHSSLPGSPGSQTSAVGSEGVPRARPKVN 353
>01_05_0319 - 20871781-20871909,20872001-20872053,20873271-20873598
Length = 169
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 243 GLGSSASGGSTPALENDDEAGGNSSSEEKSG 151
G GS + G+ ND+ GGNS+S G
Sbjct: 20 GAGSGSRAGAPGGAVNDNNNGGNSASPSSGG 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,805,814
Number of Sequences: 37544
Number of extensions: 407734
Number of successful extensions: 1679
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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