Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00830
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53148| Best HMM Match : rve (HMM E-Value=4.8e-21)                   31   1.3  
SB_10014| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  

>SB_53148| Best HMM Match : rve (HMM E-Value=4.8e-21)
          Length = 1329

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/65 (24%), Positives = 23/65 (35%)
 Frame = +2

Query: 329 LSQLHRHCRRLTRKARAHVRSTLATQSRQPYTLHRCPQLRRTKSPNKKCFLPLACNVLPS 508
           L   H +CR          +    T S+QP ++H      R  +P  +   P  C  L  
Sbjct: 161 LQSAHDYCRTYEAAELQKFKFASPTGSQQPLSVHPVQGKERAPNPTSRFTKPSICPALRK 220

Query: 509 LCNLC 523
            C  C
Sbjct: 221 KCRNC 225


>SB_10014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 126 AARSKDLLSRTSPLMNCFRQLRHHFPALESTRRLPKNRAPLRAELAASIRPVLCKDG 296
           +A+S+D  + T+ L +  R   + +   E+ RRLP     LR   A     V+ +DG
Sbjct: 11  SAKSRDHTAETTCLSHAIRSYIYRYLEKETGRRLPTMDDDLRQRFAVHSGNVIVRDG 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,677,738
Number of Sequences: 59808
Number of extensions: 412736
Number of successful extensions: 1171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)