Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00830
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084153-2|AAK84597.1|  340|Caenorhabditis elegans Sphingomyelin...    31   1.2  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    28   6.2  

>AC084153-2|AAK84597.1|  340|Caenorhabditis elegans Sphingomyelin
           synthase protein 3 protein.
          Length = 340

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 715 SNLVFHMIHQYCSVCMCPIKR 653
           SN+VF M H YC V MC  +R
Sbjct: 238 SNMVFRMYHAYCEVDMCMERR 258


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 237  GSSASGGSTPALENDDEAGGNSSSEEKSGLGG 142
            G  A+GG   +++N  E+ GN   EE++G  G
Sbjct: 1339 GKLANGGDNLSIKNGIESNGNDGEEEENGEEG 1370


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 237  GSSASGGSTPALENDDEAGGNSSSEEKSGLGG 142
            G  A+GG   +++N  E+ GN   EE++G  G
Sbjct: 1339 GKLANGGDNLSIKNGIESNGNDGEEEENGEEG 1370


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 489  HATCCLVCAIFALYSWLYFY*YCYNMYINSNCLF 590
            HA+ C VC +F +    Y    C+N  +  NC F
Sbjct: 3302 HASKCNVCKMFPIIGIRYRCLTCFNCDLCQNCFF 3335


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 489  HATCCLVCAIFALYSWLYFY*YCYNMYINSNCLF 590
            HA+ C VC +F +    Y    C+N  +  NC F
Sbjct: 3302 HASKCNVCKMFPIIGIRYRCLTCFNCDLCQNCFF 3335


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 489  HATCCLVCAIFALYSWLYFY*YCYNMYINSNCLF 590
            HA+ C VC +F +    Y    C+N  +  NC F
Sbjct: 3302 HASKCNVCKMFPIIGIRYRCLTCFNCDLCQNCFF 3335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,982
Number of Sequences: 27780
Number of extensions: 307569
Number of successful extensions: 972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)