Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00830
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.33 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.33 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    26   0.43 

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 270 WRRRALLVEGLGSSASGGSTPALENDDEAG 181
           W R+  LVEGL   A G  T  L++++  G
Sbjct: 233 WGRQIKLVEGLEEEAEGAITVELQSENIPG 262


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 270 WRRRALLVEGLGSSASGGSTPALENDDEAG 181
           W R+  LVEGL   A G  T  L++++  G
Sbjct: 323 WGRQIKLVEGLEEEAEGAITVELQSENIPG 352


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 267 RRRALLVEGLGSSASGGSTPALENDDEAGGNSSSEE 160
           +RR++    LG+++S  ST +  N D + G+ S  E
Sbjct: 169 KRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSE 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,123
Number of Sequences: 438
Number of extensions: 3461
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)